BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0101200 Os08g0101200|J065162L17
         (217 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0101200  Conserved hypothetical protein                      396   e-111
Os10g0188900  Conserved hypothetical protein                      339   1e-93
AK059182                                                          337   4e-93

>Os08g0101200 Conserved hypothetical protein
          Length = 217

 Score =  396 bits (1018), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 197/217 (90%), Positives = 197/217 (90%)

Query: 1   MVKTVVGDEAQVKASEETLSASTSPAQVGLVVGKLSASSDRALAYSLIPTPPTDSGAPAC 60
           MVKTVVGDEAQVKASEETLSASTSPAQVGLVVGKLSASSDRALAYSLIPTPPTDSGAPAC
Sbjct: 1   MVKTVVGDEAQVKASEETLSASTSPAQVGLVVGKLSASSDRALAYSLIPTPPTDSGAPAC 60

Query: 61  XXXXXXXXXXXXXXXXXXXXDFDVDWLAEHARQVSRMLLGGMTVIGIYIWASEASFKATS 120
                               DFDVDWLAEHARQVSRMLLGGMTVIGIYIWASEASFKATS
Sbjct: 61  SLLRAKPAAKAASSGASSSLDFDVDWLAEHARQVSRMLLGGMTVIGIYIWASEASFKATS 120

Query: 121 PAVLSQVLRAVSQVAPLYGTGVDERLLIHISYSPRRWACRICDMSSGRLRPCDFKYSKLL 180
           PAVLSQVLRAVSQVAPLYGTGVDERLLIHISYSPRRWACRICDMSSGRLRPCDFKYSKLL
Sbjct: 121 PAVLSQVLRAVSQVAPLYGTGVDERLLIHISYSPRRWACRICDMSSGRLRPCDFKYSKLL 180

Query: 181 ASLQTFRCTYNFEIRYCFLNSDASLDPTILVYFMSQS 217
           ASLQTFRCTYNFEIRYCFLNSDASLDPTILVYFMSQS
Sbjct: 181 ASLQTFRCTYNFEIRYCFLNSDASLDPTILVYFMSQS 217



>Os10g0188900 Conserved hypothetical protein
          Length = 262

 Score =  339 bits (869), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 169/198 (85%), Positives = 173/198 (87%), Gaps = 3/198 (1%)

Query: 1   MVKTVVGDEAQVKASEETLSASTSPAQVGLVVGKLSASSDRALAYSLIPTPPTDSGAPAC 60
           MVKTVVG+EAQ+KA EETLSAS SPAQVGLVVGKLSASSDRALAYSLIPTPPTDSGAPAC
Sbjct: 1   MVKTVVGEEAQLKALEETLSASASPAQVGLVVGKLSASSDRALAYSLIPTPPTDSGAPAC 60

Query: 61  XXX---XXXXXXXXXXXXXXXXXDFDVDWLAEHARQVSRMLLGGMTVIGIYIWASEASFK 117
                                  DFDVDW+AEHARQVSRMLLGGMTVIGIYIWASEASFK
Sbjct: 61  SLLRAAPNPKAAKAASSDASSSLDFDVDWVAEHARQVSRMLLGGMTVIGIYIWASEASFK 120

Query: 118 ATSPAVLSQVLRAVSQVAPLYGTGVDERLLIHISYSPRRWACRICDMSSGRLRPCDFKYS 177
           ATSPAVLSQVLRAVSQVAPLYGTGVDERLLIHISYSPRRWACRICDMSSGRLRPCDFKY+
Sbjct: 121 ATSPAVLSQVLRAVSQVAPLYGTGVDERLLIHISYSPRRWACRICDMSSGRLRPCDFKYT 180

Query: 178 KLLASLQTFRCTYNFEIR 195
           KLLASLQTFRCTYNFEIR
Sbjct: 181 KLLASLQTFRCTYNFEIR 198



>AK059182 
          Length = 244

 Score =  337 bits (864), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 169/205 (82%), Positives = 176/205 (85%), Gaps = 3/205 (1%)

Query: 1   MVKTVVGDEAQVKASEETLSASTSPAQVGLVVGKLSASSDRALAYSLIPTPPTDSGAPAC 60
           MVKTVVG+EAQ+KA EETLSAS SPAQVGLVVGKLSASSDRALAYSLIPTPPTDSGAPAC
Sbjct: 1   MVKTVVGEEAQLKALEETLSASASPAQVGLVVGKLSASSDRALAYSLIPTPPTDSGAPAC 60

Query: 61  X---XXXXXXXXXXXXXXXXXXXDFDVDWLAEHARQVSRMLLGGMTVIGIYIWASEASFK 117
                                  DFDVDW+AEHARQVSRMLLGGMTVIGIYIWASEASFK
Sbjct: 61  SLLRAAPNPKAAKAASSDASSSLDFDVDWVAEHARQVSRMLLGGMTVIGIYIWASEASFK 120

Query: 118 ATSPAVLSQVLRAVSQVAPLYGTGVDERLLIHISYSPRRWACRICDMSSGRLRPCDFKYS 177
           ATSPAVLSQVLRAVSQVAPLYGTGVDERLLIHISYSPRRWACRICDMSSGRLRPCDFKY+
Sbjct: 121 ATSPAVLSQVLRAVSQVAPLYGTGVDERLLIHISYSPRRWACRICDMSSGRLRPCDFKYT 180

Query: 178 KLLASLQTFRCTYNFEIRYCFLNSD 202
           KLLASLQTFRCTYNFEIR   + ++
Sbjct: 181 KLLASLQTFRCTYNFEIRLPVVQAE 205



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.132    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,505,657
Number of extensions: 230303
Number of successful extensions: 528
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 525
Number of HSP's successfully gapped: 3
Length of query: 217
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 120
Effective length of database: 11,971,043
Effective search space: 1436525160
Effective search space used: 1436525160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)