Os10g0188900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os10g0188900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.19 | 0.245 | 9.43 | -1.38 | 1.08 | -1.41 | 0.0761 | -0.714 | -0.468 | 6.14 | 29.58 | 11 | -- | -- |
| 27.82 | 0.246 | 9.44 | -1.48 | 1.1 | -1.43 | 0.00297 | -- | -0.482 | 6.19 | 30.65 | 18 | -- | -- |
| 27.2 | 0.243 | 9.43 | -1.39 | 1.08 | -1.41 | -- | -0.698 | -0.469 | 6.14 | 29.56 | 11 | -- | -- |
| 27.8 | 0.246 | 9.44 | -1.5 | 1.09 | -1.43 | -- | -- | -0.485 | 6.19 | 30.71 | 18 | -- | -- |
| 76.84 | 0.411 | 9.43 | -1.29 | -- | -1.27 | -- | -0.96 | -0.372 | -- | 24.14 | 2 | -- | -- |
| 54.62 | 0.346 | 9.38 | -1.17 | 0.925 | -- | 0.0527 | -- | -0.219 | 7.91 | -- | -- | -- | -- |
| 54.62 | 0.346 | 9.38 | -1.16 | 0.925 | -- | -- | -- | -0.219 | 7.9 | -- | -- | -- | -- |
| 78.33 | 0.414 | 9.45 | -1.41 | -- | -1.14 | -- | -- | -0.425 | -- | 25 | 2 | -- | -- |
| 80.85 | 0.421 | 9.38 | -- | 0.974 | -0.947 | -- | -- | -0.202 | 6.93 | 52.04 | 18 | -- | -- |
| 101.16 | 0.47 | 9.4 | -1.15 | -- | -- | -- | -- | -0.206 | -- | -- | -- | -- | -- |
| 90.36 | 0.445 | 9.35 | -- | 0.917 | -- | -- | -- | -0.089 | 7.99 | -- | -- | -- | -- |
| 127.11 | 0.527 | 9.4 | -- | -- | -0.695 | -- | -- | -0.198 | -- | 25.2 | 2 | -- | -- |
| 136.31 | 0.545 | 9.38 | -- | -- | -- | -- | -- | -0.0782 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.89 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 2 | 26.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 3 | 27.00 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 4 | 27.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 22 |
| 5 | 27.12 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 10 | 27.22 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 13 | 27.25 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 14 | 27.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 16 | 27.30 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 23 | 27.37 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 31 | 27.48 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 40 | 27.55 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 44 | 27.59 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 45 | 27.61 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 49 | 27.63 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 53 | 27.69 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 60 | 27.72 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 105 | 28.08 | temperature | 15 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 110 | 28.10 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 114 | 28.13 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 14 |
| 191 | 28.38 | temperature | 10 | 1440 | > th | dose dependent | sin | 19 | NA |
| 199 | 28.39 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 233 | 28.46 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 239 | 28.48 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 9 |
| 273 | 28.53 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 280 | 28.53 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 380 | 28.67 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 21 |
| 416 | 28.71 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 431 | 28.73 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 621 | 28.90 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 731 | 29.02 | temperature | 30 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 740 | 29.03 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 897 | 29.21 | temperature | 30 | 1440 | < th | dose dependent | sin | 19 | NA |
| 964 | 29.29 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 11 |