BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0188900 Os10g0188900|AK070874
         (262 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G28670.1  | chr3:10744183-10746983 FORWARD LENGTH=492          242   1e-64

>AT3G28670.1 | chr3:10744183-10746983 FORWARD LENGTH=492
          Length = 491

 Score =  242 bits (618), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 128/272 (47%), Positives = 166/272 (61%), Gaps = 12/272 (4%)

Query: 1   MVKTVVGEEAQLKALEETLSASASPAQVGLVVGKLSASSDRALAYSLIPTPPTDSGAPAC 60
           MVK VVGE+ +L ++E+ LS SA PA+VGLV+GKLS+  DR   + LIPTP  D G PAC
Sbjct: 1   MVKAVVGEDTRLTSVEDRLSHSAIPAEVGLVIGKLSSVLDRGFVFDLIPTPSNDDGEPAC 60

Query: 61  SLL--RXXXXXXXXXXXXXXXXXXLDFDVDWVAEHARQVSRMLLGGMTVIGIYIWASEAS 118
           ++L  +                  L  D DWVAEHARQVSRMLLGGM V+GIY+WAS+ +
Sbjct: 61  AVLETKDDKRKPSKSKSQSSESSSLSIDSDWVAEHARQVSRMLLGGMKVVGIYVWASDIA 120

Query: 119 FKATSPAVLSQVLRAVSQVAPLYGTGVDERLLIHISYSPRRWACRIC----DMSSGRLRP 174
           FK  S  +L Q ++AVS         ++E LLIHI YSPRRW CR C     ++S  LRP
Sbjct: 121 FK-NSTMILCQAMKAVSDAIRHLDPSLNEALLIHICYSPRRWNCRTCLLSSSITSSNLRP 179

Query: 175 CDFKYTKLLASLQTFRCTYNFEIRLPVV-----QAEPFKKVISKAISHLTKQVQNAKALI 229
           CDFK  K+L+SLQ FRC+YNF  RLP+       A+ F   I K ++   K++ +A A+I
Sbjct: 180 CDFKLGKVLSSLQRFRCSYNFSFRLPIYGEGGSSAQTFTDTIRKELAIHAKELNSANAMI 239

Query: 230 DGVLFLDDMDNTLEGPHNVEFLVPFKNNLPAE 261
           DG L  +D     +G H +E L PF  +  AE
Sbjct: 240 DGDLVHNDEPCNTDGEHEIELLFPFMKDTRAE 271



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,967,248
Number of extensions: 175992
Number of successful extensions: 411
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 407
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 165
Effective length of database: 8,447,217
Effective search space: 1393790805
Effective search space used: 1393790805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)