FiT-DB / Search/ Help/ Sample detail

Os08g0101200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.98 (0.0148) R2 : 0.568
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.619 (0.0387) R2dC : 0.243 R2C : 0.166
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.563 (0.0311) R2dN8 : 0.402 R2N8 : 0.324
σ : 0.279
deviance : 35.49
__
_____
C
peak time of C : 5.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
25.42 0.237 10 -0.543 0.791 -0.299 0.1 -0.491 0.489 3.87 0.1702 82 -- --
26.36 0.239 10 -0.554 0.737 -0.261 -0.278 -- 0.485 3.92 0.1794 63 -- --
25.44 0.235 10 -0.546 0.791 -0.298 -- -0.448 0.488 3.87 0.17 81 -- --
26.64 0.24 10 -0.552 0.789 -0.3 -- -- 0.484 3.84 0.1702 81 -- --
31.64 0.262 9.99 -0.311 -- 0.663 -- -1.03 0.56 -- 0.008435 663 -- --
28.02 0.248 10 -0.532 0.628 -- -0.0833 -- 0.504 5.53 -- -- -- --
28.03 0.248 10 -0.532 0.628 -- -- -- 0.504 5.56 -- -- -- --
29.27 0.252 10 -0.461 -- 0.717 -- -- 0.541 -- 0.05142 691 -- --
34.74 0.275 9.99 -- 0.713 -0.222 -- -- 0.523 4.22 0.3596 77 -- --
48.5 0.325 10 -0.511 -- -- -- -- 0.519 -- -- -- -- --
35.49 0.279 9.98 -- 0.619 -- -- -- 0.563 5.6 -- -- -- --
34.67 0.274 9.99 -- -- 0.751 -- -- 0.572 -- 0.00664 710 -- --
55.4 0.347 9.99 -- -- -- -- -- 0.576 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 24.43 humidity 50.0 270 > th dose independent rect. 7 10
2 24.43 radiation 10.0 10 < th dose dependent sin 11 NA
3 24.49 temperature 20.0 270 > th dose dependent rect. 8 3
4 24.50 wind 5.0 30 < th dose independent rect. 14 18
7 24.57 temperature 15.0 270 > th dose independent rect. 17 14
12 24.61 temperature 10.0 270 > th dose dependent rect. 7 6
15 24.63 humidity 50.0 10 > th dose independent rect. 8 10
17 24.63 radiation 10.0 720 < th dose independent rect. 16 10
20 24.64 temperature 20.0 270 > th dose dependent rect. 7 6
21 24.65 radiation 1.0 90 < th dose dependent sin 11 NA
22 24.66 temperature 15.0 10 > th dose independent rect. 18 14
30 24.72 temperature 30.0 720 < th dose independent rect. 17 2
32 24.72 radiation 20.0 720 < th dose dependent rect. 16 10
33 24.73 radiation 1.0 90 < th dose independent sin 11 NA
41 24.76 wind 7.0 270 < th dose independent rect. 17 14
42 24.76 precipitation 0.1 270 < th dose independent rect. 17 14
44 24.76 precipitation 0.1 270 < th dose dependent rect. 17 14
45 24.77 wind 1.0 10 > th dose independent rect. 8 10
48 24.78 wind 1.0 270 > th dose independent rect. 7 10
53 24.80 wind 5.0 10 < th dose independent rect. 18 14
60 24.82 humidity 70.0 720 > th dose independent rect. 16 4
61 24.82 radiation 20.0 720 < th dose independent rect. 15 4
62 24.82 temperature 30.0 720 < th dose independent rect. 17 10
73 24.85 humidity 50.0 720 > th dose dependent rect. 17 2
74 24.85 temperature 10.0 10 > th dose dependent rect. 18 14
77 24.87 radiation 10.0 720 < th dose independent rect. 16 1
94 24.90 humidity 90.0 720 < th dose independent rect. 20 3
96 24.90 wind 9.0 270 < th dose independent rect. 7 10
103 24.91 radiation 30.0 720 < th dose dependent rect. 16 1
114 24.94 humidity 70.0 720 > th dose independent rect. 17 10
117 24.94 radiation 30.0 720 < th dose dependent rect. 15 4
120 24.95 temperature 25.0 270 > th dose independent rect. 7 6
124 24.95 precipitation 0.1 10 < th dose independent rect. 18 14
127 24.95 precipitation 0.1 10 < th dose dependent rect. 18 14
128 24.96 temperature 25.0 270 > th dose independent rect. 8 3
132 24.97 temperature 10.0 270 > th dose independent rect. 7 10
133 24.97 atmosphere 1015.0 270 < th dose independent rect. 7 10
136 24.97 radiation 40.0 270 < th dose independent rect. 17 14
139 24.97 temperature 10.0 10 > th dose dependent rect. 8 10
146 24.98 precipitation 0.1 270 < th dose independent rect. 3 16
148 24.98 precipitation 0.1 270 < th dose dependent rect. 3 16
160 25.00 atmosphere 995.0 270 > th dose independent rect. 7 9
169 25.01 atmosphere 995.0 10 > th dose independent rect. 8 10
179 25.02 wind 9.0 270 < th dose dependent rect. 2 6
186 25.03 wind 9.0 10 < th dose independent rect. 8 10
198 25.04 precipitation 0.1 270 < th dose independent rect. 7 9
206 25.04 precipitation 0.1 270 < th dose dependent rect. 7 9
218 25.06 temperature 10.0 10 > th dose independent rect. 8 10
220 25.06 atmosphere 1015.0 10 < th dose independent rect. 8 10
223 25.06 humidity 50.0 10 > th dose independent rect. 18 14
230 25.07 precipitation 0.1 270 < th dose independent rect. 2 6
232 25.07 precipitation 0.1 10 < th dose independent rect. 8 10
233 25.07 atmosphere 995.0 10 > th dose independent rect. 18 14
238 25.07 humidity 90.0 720 < th dose dependent rect. 20 1
242 25.07 precipitation 0.1 270 < th dose dependent rect. 2 6
244 25.07 precipitation 0.1 10 < th dose dependent rect. 8 10
250 25.08 temperature 20.0 10 > th dose independent rect. 5 16
252 25.08 wind 5.0 10 < th dose independent rect. 13 21
259 25.08 wind 9.0 270 < th dose dependent rect. 2 17
275 25.10 humidity 50.0 720 > th dose dependent rect. 16 10
278 25.11 atmosphere 1000.0 270 > th dose independent rect. 19 8
287 25.12 radiation 40.0 10 < th dose independent rect. 18 14
288 25.12 atmosphere 995.0 90 > th dose independent rect. 17 15
299 25.13 radiation 40.0 270 < th dose independent rect. 13 18
301 25.13 wind 9.0 90 < th dose dependent rect. 4 15
304 25.14 atmosphere 1000.0 10 > th dose independent rect. 21 8
318 25.15 temperature 20.0 10 > th dose independent rect. 5 18
326 25.16 wind 5.0 270 < th dose independent rect. 2 6
329 25.16 humidity 50.0 270 > th dose independent rect. 17 14
349 25.18 temperature 25.0 270 > th dose independent rect. 10 1
351 25.18 radiation 20.0 270 < th dose independent rect. 2 6
359 25.18 wind 9.0 270 < th dose independent rect. 8 18
372 25.19 humidity 50.0 10 > th dose independent rect. 8 21
391 25.20 humidity 50.0 270 > th dose dependent rect. 19 7
395 25.20 wind 9.0 90 < th dose dependent rect. 17 15
398 25.21 atmosphere 1010.0 270 < th dose independent rect. 2 6
402 25.21 radiation 1.0 30 < th dose independent rect. 21 9
403 25.21 temperature 25.0 30 > th dose independent rect. 18 14
406 25.21 humidity 90.0 720 < th dose dependent rect. 19 4
414 25.22 temperature 10.0 270 > th dose independent rect. 2 6
416 25.22 temperature 30.0 270 < th dose independent rect. 2 6
417 25.22 humidity 50.0 270 > th dose independent rect. 2 6
419 25.22 atmosphere 995.0 270 > th dose independent rect. 2 6
422 25.22 temperature 25.0 270 < th dose independent rect. 2 8
424 25.22 humidity 50.0 10 > th dose independent rect. 10 8
431 25.22 temperature 10.0 270 > th dose independent rect. 8 18
437 25.22 radiation 40.0 270 < th dose dependent rect. 2 7
440 25.22 radiation 40.0 270 < th dose dependent rect. 17 14
441 25.22 wind 9.0 270 < th dose dependent rect. 15 16
442 25.22 radiation 1.0 30 < th dose dependent rect. 21 19
444 25.22 radiation 1.0 90 < th dose dependent rect. 19 23
447 25.23 radiation 40.0 270 < th dose independent rect. 2 6
475 25.24 humidity 90.0 30 < th dose independent rect. 17 15
476 25.24 humidity 50.0 270 > th dose independent rect. 8 18
478 25.24 humidity 90.0 30 < th dose independent rect. 13 19
506 25.25 radiation 1.0 270 < th dose dependent rect. 9 18
508 25.26 humidity 60.0 270 > th dose independent rect. 8 3
518 25.26 temperature 15.0 270 > th dose independent rect. 3 16
527 25.26 radiation 1.0 30 < th dose dependent rect. 21 9
529 25.26 wind 3.0 270 < th dose dependent rect. 2 13
547 25.27 radiation 1.0 270 < th dose dependent rect. 11 16
578 25.29 radiation 1.0 270 < th dose independent rect. 9 18
602 25.30 atmosphere 1000.0 270 > th dose independent rect. 21 5
614 25.30 humidity 50.0 10 > th dose independent rect. 10 18
617 25.30 temperature 30.0 720 < th dose dependent rect. 17 2
630 25.30 humidity 50.0 10 > th dose dependent rect. 10 18
635 25.31 temperature 10.0 270 > th dose independent rect. 19 8
636 25.31 temperature 30.0 270 < th dose independent rect. 19 8
637 25.31 humidity 50.0 270 > th dose independent rect. 19 8
640 25.31 radiation 1.0 270 < th dose independent rect. 19 8
648 25.31 radiation 1.0 270 < th dose independent rect. 12 15
650 25.31 atmosphere 1015.0 270 < th dose independent rect. 3 16
658 25.31 radiation 1.0 270 < th dose dependent rect. 19 8
666 25.32 precipitation 0.1 270 < th dose independent rect. 3 4
667 25.32 wind 9.0 270 < th dose independent rect. 19 8
670 25.32 precipitation 0.1 270 < th dose independent rect. 19 8
684 25.32 precipitation 0.1 270 < th dose dependent rect. 3 4
688 25.32 precipitation 0.1 270 < th dose dependent rect. 19 8
700 25.32 radiation 1.0 270 < th dose dependent rect. 5 22
707 25.33 atmosphere 1010.0 90 < th dose independent rect. 17 15
708 25.33 radiation 1.0 30 < th dose independent rect. 21 17
730 25.34 wind 5.0 90 < th dose independent rect. 4 15
734 25.34 precipitation 0.1 30 < th dose independent rect. 5 16
744 25.34 humidity 50.0 270 > th dose dependent rect. 2 6
750 25.34 radiation 1.0 90 < th dose dependent rect. 19 12
754 25.34 precipitation 0.1 30 < th dose dependent rect. 5 16
809 25.36 radiation 1.0 90 < th dose dependent rect. 19 18
845 25.37 radiation 1.0 90 < th dose dependent rect. 21 22
851 25.38 precipitation 0.1 720 < th dose independent rect. 13 8
853 25.38 radiation 1.0 30 > th dose independent rect. 18 14
854 25.38 precipitation 0.1 90 < th dose independent rect. 5 14
857 25.38 wind 9.0 270 < th dose independent rect. 3 16
868 25.38 precipitation 0.1 720 < th dose dependent rect. 13 8
874 25.38 precipitation 0.1 90 < th dose dependent rect. 5 14
894 25.39 temperature 25.0 30 < th dose independent rect. 16 12
897 25.39 wind 1.0 270 > th dose independent rect. 14 17
900 25.39 temperature 15.0 10 > th dose dependent rect. 5 3
933 25.40 radiation 1.0 270 > th dose independent rect. 7 8
947 25.40 radiation 1.0 30 < th dose independent rect. 19 11
949 25.40 humidity 90.0 720 < th dose independent rect. 11 12
988 25.40 humidity 50.0 30 > th dose dependent rect. 8 21