BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0101200 Os08g0101200|J065162L17
         (217 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G28670.1  | chr3:10744183-10746983 FORWARD LENGTH=492          195   1e-50

>AT3G28670.1 | chr3:10744183-10746983 FORWARD LENGTH=492
          Length = 491

 Score =  195 bits (496), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 101/204 (49%), Positives = 125/204 (61%), Gaps = 10/204 (4%)

Query: 1   MVKTVVGDEAQVKASEETLSASTSPAQVGLVVGKLSASSDRALAYSLIPTPPTDSGAPAC 60
           MVK VVG++ ++ + E+ LS S  PA+VGLV+GKLS+  DR   + LIPTP  D G PAC
Sbjct: 1   MVKAVVGEDTRLTSVEDRLSHSAIPAEVGLVIGKLSSVLDRGFVFDLIPTPSNDDGEPAC 60

Query: 61  XXXXXX-----XXXXXXXXXXXXXXDFDVDWLAEHARQVSRMLLGGMTVIGIYIWASEAS 115
                                      D DW+AEHARQVSRMLLGGM V+GIY+WAS+ +
Sbjct: 61  AVLETKDDKRKPSKSKSQSSESSSLSIDSDWVAEHARQVSRMLLGGMKVVGIYVWASDIA 120

Query: 116 FKATSPAVLSQVLRAVSQVAPLYGTGVDERLLIHISYSPRRWACRICDMS----SGRLRP 171
           FK  S  +L Q ++AVS         ++E LLIHI YSPRRW CR C +S    S  LRP
Sbjct: 121 FK-NSTMILCQAMKAVSDAIRHLDPSLNEALLIHICYSPRRWNCRTCLLSSSITSSNLRP 179

Query: 172 CDFKYSKLLASLQTFRCTYNFEIR 195
           CDFK  K+L+SLQ FRC+YNF  R
Sbjct: 180 CDFKLGKVLSSLQRFRCSYNFSFR 203



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.132    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,918,942
Number of extensions: 133634
Number of successful extensions: 298
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 123
Effective length of database: 8,529,465
Effective search space: 1049124195
Effective search space used: 1049124195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)