BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0695800 Os07g0695800|AK100482
         (1008 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0695800  Similar to 2-oxoglutarate dehydrogenase, E1 co...  2102   0.0  
Os04g0390000  Similar to 2-oxoglutarate dehydrogenase, E1 co...  1802   0.0  

>Os07g0695800 Similar to 2-oxoglutarate dehydrogenase, E1 component
          Length = 1008

 Score = 2102 bits (5445), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1008/1008 (100%), Positives = 1008/1008 (100%)

Query: 1    MAWLRAASGLARHALRRRVPVASRFFHSARPAWRSSAPVPRAVPLSRLTDSFLDGTSSVY 60
            MAWLRAASGLARHALRRRVPVASRFFHSARPAWRSSAPVPRAVPLSRLTDSFLDGTSSVY
Sbjct: 1    MAWLRAASGLARHALRRRVPVASRFFHSARPAWRSSAPVPRAVPLSRLTDSFLDGTSSVY 60

Query: 61   LEELQRAWEADPSSVDESWDNFFRNFLGQAAPSSAGLSGQTIQESMQLLLLVRAYQVNGH 120
            LEELQRAWEADPSSVDESWDNFFRNFLGQAAPSSAGLSGQTIQESMQLLLLVRAYQVNGH
Sbjct: 61   LEELQRAWEADPSSVDESWDNFFRNFLGQAAPSSAGLSGQTIQESMQLLLLVRAYQVNGH 120

Query: 121  MKAKLDPLRLDDRAVPDDLDLSLYGFTEADLDREFFLGVWRMAGFLSDNRPVLTLREILS 180
            MKAKLDPLRLDDRAVPDDLDLSLYGFTEADLDREFFLGVWRMAGFLSDNRPVLTLREILS
Sbjct: 121  MKAKLDPLRLDDRAVPDDLDLSLYGFTEADLDREFFLGVWRMAGFLSDNRPVLTLREILS 180

Query: 181  KLEQAYCGPIGYEYMHIPDRDKCNWLRDKIETAKLKEYNKDRRLVMLDRLIWSTQFENFL 240
            KLEQAYCGPIGYEYMHIPDRDKCNWLRDKIETAKLKEYNKDRRLVMLDRLIWSTQFENFL
Sbjct: 181  KLEQAYCGPIGYEYMHIPDRDKCNWLRDKIETAKLKEYNKDRRLVMLDRLIWSTQFENFL 240

Query: 241  ATKWATAKRFGLEGGETLIPGMKEMFDRAADLGVENIVIGMPHRGRLNVLGNVVRKPLSQ 300
            ATKWATAKRFGLEGGETLIPGMKEMFDRAADLGVENIVIGMPHRGRLNVLGNVVRKPLSQ
Sbjct: 241  ATKWATAKRFGLEGGETLIPGMKEMFDRAADLGVENIVIGMPHRGRLNVLGNVVRKPLSQ 300

Query: 301  IFSEFTGGTRPVEGEDGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPV 360
            IFSEFTGGTRPVEGEDGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPV
Sbjct: 301  IFSEFTGGTRPVEGEDGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPV 360

Query: 361  VIGKTRAKQFYSNDLDRTKNMGILIHGDGSFAGQGVVYETLHLSALPSYTTGGTIHIVVN 420
            VIGKTRAKQFYSNDLDRTKNMGILIHGDGSFAGQGVVYETLHLSALPSYTTGGTIHIVVN
Sbjct: 361  VIGKTRAKQFYSNDLDRTKNMGILIHGDGSFAGQGVVYETLHLSALPSYTTGGTIHIVVN 420

Query: 421  NQVAFTTDPRAGRSSQYCTDVAKALNAPIFHVNGDDLEAVVRVCELAAEWRQTFHSDVVV 480
            NQVAFTTDPRAGRSSQYCTDVAKALNAPIFHVNGDDLEAVVRVCELAAEWRQTFHSDVVV
Sbjct: 421  NQVAFTTDPRAGRSSQYCTDVAKALNAPIFHVNGDDLEAVVRVCELAAEWRQTFHSDVVV 480

Query: 481  DLICYRRFGHNEIDEPSFTQPKMYQVIKNHPSSLKLYEQKLLGTGEVSKEDVQKIHEKVN 540
            DLICYRRFGHNEIDEPSFTQPKMYQVIKNHPSSLKLYEQKLLGTGEVSKEDVQKIHEKVN
Sbjct: 481  DLICYRRFGHNEIDEPSFTQPKMYQVIKNHPSSLKLYEQKLLGTGEVSKEDVQKIHEKVN 540

Query: 541  RILNEEFAKSKDYVPNKRDWLSAYWTGFKSPEQISRVRNTGVNPGVLKRVGQAITTLPED 600
            RILNEEFAKSKDYVPNKRDWLSAYWTGFKSPEQISRVRNTGVNPGVLKRVGQAITTLPED
Sbjct: 541  RILNEEFAKSKDYVPNKRDWLSAYWTGFKSPEQISRVRNTGVNPGVLKRVGQAITTLPED 600

Query: 601  FKPHRAVKKIFEQRAAMIESGEGIDWAVAEALAFATLIVEGNHVRLSGQDVERGTFSHRH 660
            FKPHRAVKKIFEQRAAMIESGEGIDWAVAEALAFATLIVEGNHVRLSGQDVERGTFSHRH
Sbjct: 601  FKPHRAVKKIFEQRAAMIESGEGIDWAVAEALAFATLIVEGNHVRLSGQDVERGTFSHRH 660

Query: 661  AVLHDQENGRKHCPLDHVVMNQNEELFTVSNSSLSEFAVLGFEMGYSMENPNSLVLWEAQ 720
            AVLHDQENGRKHCPLDHVVMNQNEELFTVSNSSLSEFAVLGFEMGYSMENPNSLVLWEAQ
Sbjct: 661  AVLHDQENGRKHCPLDHVVMNQNEELFTVSNSSLSEFAVLGFEMGYSMENPNSLVLWEAQ 720

Query: 721  FGDFSNGAQVMFDQFLSSGEAKWLRQTGLVVLLPHGYDGQGPEHSSARLERFLQMSDDNP 780
            FGDFSNGAQVMFDQFLSSGEAKWLRQTGLVVLLPHGYDGQGPEHSSARLERFLQMSDDNP
Sbjct: 721  FGDFSNGAQVMFDQFLSSGEAKWLRQTGLVVLLPHGYDGQGPEHSSARLERFLQMSDDNP 780

Query: 781  FVIPEMEPTLRKQIQECNWQVVNVTTPANYFHVLRRQIHREFRKPLIVMAPKNLLRHKDC 840
            FVIPEMEPTLRKQIQECNWQVVNVTTPANYFHVLRRQIHREFRKPLIVMAPKNLLRHKDC
Sbjct: 781  FVIPEMEPTLRKQIQECNWQVVNVTTPANYFHVLRRQIHREFRKPLIVMAPKNLLRHKDC 840

Query: 841  KSNLSEFDDVEGHPGFDKQGTRFKRLIKDRNDHKQVEEGIKRLVLCSGKVYYELDEERKK 900
            KSNLSEFDDVEGHPGFDKQGTRFKRLIKDRNDHKQVEEGIKRLVLCSGKVYYELDEERKK
Sbjct: 841  KSNLSEFDDVEGHPGFDKQGTRFKRLIKDRNDHKQVEEGIKRLVLCSGKVYYELDEERKK 900

Query: 901  TERSDVAICRVEQLCPFPYDLIQRELKRYPNAEIVWCQEEPMNMGAYSYISPRLYASMKT 960
            TERSDVAICRVEQLCPFPYDLIQRELKRYPNAEIVWCQEEPMNMGAYSYISPRLYASMKT
Sbjct: 901  TERSDVAICRVEQLCPFPYDLIQRELKRYPNAEIVWCQEEPMNMGAYSYISPRLYASMKT 960

Query: 961  LGRGSFDDIKYVGRAPSAATATGFLSVHAQEQTELVKKALQAEPIKFP 1008
            LGRGSFDDIKYVGRAPSAATATGFLSVHAQEQTELVKKALQAEPIKFP
Sbjct: 961  LGRGSFDDIKYVGRAPSAATATGFLSVHAQEQTELVKKALQAEPIKFP 1008



>Os04g0390000 Similar to 2-oxoglutarate dehydrogenase, E1 component
          Length = 1001

 Score = 1802 bits (4668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 841/987 (85%), Positives = 926/987 (93%), Gaps = 2/987 (0%)

Query: 22   ASRFFHSARPAWRSSAPVPRAVPLSRLTDSFLDGTSSVYLEELQRAWEADPSSVDESWDN 81
            A R+FHS RP  R +APVPRAVPLSRLTDSFLDGTSSVYLEELQRAWEADP+SVDESWDN
Sbjct: 16   APRYFHSTRPR-RFAAPVPRAVPLSRLTDSFLDGTSSVYLEELQRAWEADPTSVDESWDN 74

Query: 82   FFRNFLGQAAPSSAGLSGQTIQESMQLLLLVRAYQVNGHMKAKLDPLRLDDRAVPDDLDL 141
            FFRNF+GQAA +S G+SGQTIQESM+LLLLVRAYQV+GH+KAKLDPL L++R +PD LD 
Sbjct: 75   FFRNFVGQAA-TSPGISGQTIQESMRLLLLVRAYQVSGHLKAKLDPLALEERPIPDVLDP 133

Query: 142  SLYGFTEADLDREFFLGVWRMAGFLSDNRPVLTLREILSKLEQAYCGPIGYEYMHIPDRD 201
            + YGF+EADLDREFFLGVWRMAGFLS+NRPV TLR +L +LEQAYCG IGYEYMHIPDR+
Sbjct: 134  AFYGFSEADLDREFFLGVWRMAGFLSENRPVQTLRSVLERLEQAYCGTIGYEYMHIPDRE 193

Query: 202  KCNWLRDKIETAKLKEYNKDRRLVMLDRLIWSTQFENFLATKWATAKRFGLEGGETLIPG 261
            KCNWLRD+IET   +EY+ DRR VMLDRL+WSTQFE+FLA KW TAKRFGLEG ETLIPG
Sbjct: 194  KCNWLRDRIETVNAREYSYDRRQVMLDRLMWSTQFESFLAQKWTTAKRFGLEGAETLIPG 253

Query: 262  MKEMFDRAADLGVENIVIGMPHRGRLNVLGNVVRKPLSQIFSEFTGGTRPVEGEDGLYTG 321
            MKEMFDRAADLGVE+IVIGMPHRGRLNVLGNVVRKPL QIFSEF+GGT+P E  +GLYTG
Sbjct: 254  MKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTKPAEEGEGLYTG 313

Query: 322  TGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQFYSNDLDRTKNM 381
            TGDVKYHLGTSYDRPTRGGK IHLSLVANPSHLEAVDPVV GKTRAKQ+YSNDLDRTKN+
Sbjct: 314  TGDVKYHLGTSYDRPTRGGKHIHLSLVANPSHLEAVDPVVAGKTRAKQYYSNDLDRTKNL 373

Query: 382  GILIHGDGSFAGQGVVYETLHLSALPSYTTGGTIHIVVNNQVAFTTDPRAGRSSQYCTDV 441
            G+L+HGDGSF+GQGVVYETLHLSALP+YTTGGTIHIVVNNQVAFTTDPRAGRSSQYCTDV
Sbjct: 374  GVLLHGDGSFSGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAFTTDPRAGRSSQYCTDV 433

Query: 442  AKALNAPIFHVNGDDLEAVVRVCELAAEWRQTFHSDVVVDLICYRRFGHNEIDEPSFTQP 501
            AKAL+APIFHVNGDDLEAVV VCELAAEWRQTFHSDVVVD++CYRRFGHNEIDEPSFTQP
Sbjct: 434  AKALDAPIFHVNGDDLEAVVHVCELAAEWRQTFHSDVVVDIVCYRRFGHNEIDEPSFTQP 493

Query: 502  KMYQVIKNHPSSLKLYEQKLLGTGEVSKEDVQKIHEKVNRILNEEFAKSKDYVPNKRDWL 561
            KMY++I+NH S+L++Y+ +LL +G++SKED+ K+ +KV+ ILN+EF  SK+Y+PNKRDWL
Sbjct: 494  KMYKIIRNHQSALEIYQNRLLESGKISKEDIDKMQKKVSTILNDEFQNSKEYIPNKRDWL 553

Query: 562  SAYWTGFKSPEQISRVRNTGVNPGVLKRVGQAITTLPEDFKPHRAVKKIFEQRAAMIESG 621
            SAYWTGFKSPEQISR+RNTGV P +LKRVG+A+TTLPE+FKPHRAVKKIFE R  MIE+G
Sbjct: 554  SAYWTGFKSPEQISRIRNTGVKPEILKRVGEAMTTLPENFKPHRAVKKIFELRRQMIETG 613

Query: 622  EGIDWAVAEALAFATLIVEGNHVRLSGQDVERGTFSHRHAVLHDQENGRKHCPLDHVVMN 681
            EGIDWAV EALAFATLI+EGNHVRLSGQDVERGTFSHRHAV+HDQE G ++CPLD++VMN
Sbjct: 614  EGIDWAVGEALAFATLIIEGNHVRLSGQDVERGTFSHRHAVIHDQETGEQYCPLDNLVMN 673

Query: 682  QNEELFTVSNSSLSEFAVLGFEMGYSMENPNSLVLWEAQFGDFSNGAQVMFDQFLSSGEA 741
            Q+EELFTVSNSSLSEFAVLGFE+GYSMENPNSLVLWEAQFGDFSNGAQV+FDQFLSSGEA
Sbjct: 674  QDEELFTVSNSSLSEFAVLGFELGYSMENPNSLVLWEAQFGDFSNGAQVIFDQFLSSGEA 733

Query: 742  KWLRQTGLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMEPTLRKQIQECNWQV 801
            KWLRQTGLVV LPHGYDGQGPEHSSARLERFLQMSDDNP+VIPEM+PTLRKQIQ+CNWQV
Sbjct: 734  KWLRQTGLVVCLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDPTLRKQIQQCNWQV 793

Query: 802  VNVTTPANYFHVLRRQIHREFRKPLIVMAPKNLLRHKDCKSNLSEFDDVEGHPGFDKQGT 861
            VNVTTPANYFHVLRRQIHR+FRKPLIVM+PKNLLRHKDCKSNLSEFDD+ GHPGFDKQGT
Sbjct: 794  VNVTTPANYFHVLRRQIHRDFRKPLIVMSPKNLLRHKDCKSNLSEFDDLAGHPGFDKQGT 853

Query: 862  RFKRLIKDRNDHKQVEEGIKRLVLCSGKVYYELDEERKKTERSDVAICRVEQLCPFPYDL 921
            RFKRLIKD+N+HK +EEGIKRLVLCSGKVYYELDEER+K ER DVAICRVEQLCPFPYDL
Sbjct: 854  RFKRLIKDQNNHKDLEEGIKRLVLCSGKVYYELDEERRKKERDDVAICRVEQLCPFPYDL 913

Query: 922  IQRELKRYPNAEIVWCQEEPMNMGAYSYISPRLYASMKTLGRGSFDDIKYVGRAPSAATA 981
            IQRELKRYPNAEIVWCQEEPMNMGAYSYI+PRL  +M+ LGRG+ DDIKYVGRAPSAATA
Sbjct: 914  IQRELKRYPNAEIVWCQEEPMNMGAYSYINPRLLTAMRALGRGTIDDIKYVGRAPSAATA 973

Query: 982  TGFLSVHAQEQTELVKKALQAEPIKFP 1008
            TGF SVH QEQTELV+KALQ +PI  P
Sbjct: 974  TGFYSVHVQEQTELVQKALQRDPINSP 1000



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 36,729,741
Number of extensions: 1664877
Number of successful extensions: 3195
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 3193
Number of HSP's successfully gapped: 2
Length of query: 1008
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 897
Effective length of database: 11,240,047
Effective search space: 10082322159
Effective search space used: 10082322159
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 161 (66.6 bits)