Os04g0390000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 2-oxoglutarate dehydrogenase, E1 component.
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Os04g0390000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 2-oxoglutarate dehydrogenase, E1 component.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.53 | 0.173 | 12.3 | 0.262 | 0.473 | -0.203 | -0.225 | -0.849 | 0.0585 | 23.7 | 29 | 4775 | -- | -- |
| 13.77 | 0.173 | 12.3 | 0.0743 | 0.474 | -0.304 | -0.166 | -- | 0.0179 | 23.6 | 28.7 | 4566 | -- | -- |
| 13.75 | 0.173 | 12.3 | 0.271 | 0.475 | -0.198 | -- | -0.846 | 0.0595 | 23.6 | 29 | 4764 | -- | -- |
| 13.92 | 0.174 | 12.3 | 0.0608 | 0.48 | -0.291 | -- | -- | 0.0136 | 23.6 | 28.8 | 4764 | -- | -- |
| 27.58 | 0.245 | 12.3 | 0.227 | -- | -0.254 | -- | -0.738 | 0.0723 | -- | 29.17 | 5055 | -- | -- |
| 16.85 | 0.192 | 12.3 | 0.141 | 0.491 | -- | -0.182 | -- | 0.0283 | 23.6 | -- | -- | -- | -- |
| 16.99 | 0.193 | 12.3 | 0.148 | 0.492 | -- | -- | -- | 0.0293 | 23.5 | -- | -- | -- | -- |
| 27.28 | 0.243 | 12.3 | 0.0462 | -- | -0.394 | -- | -- | 0.0146 | -- | 28.69 | 3928 | -- | -- |
| 14.02 | 0.174 | 12.3 | -- | 0.481 | -0.299 | -- | -- | 0.0134 | 23.6 | 28.8 | 4754 | -- | -- |
| 32.17 | 0.265 | 12.3 | 0.162 | -- | -- | -- | -- | 0.0346 | -- | -- | -- | -- | -- |
| 17.56 | 0.196 | 12.3 | -- | 0.494 | -- | -- | -- | 0.0127 | 23.5 | -- | -- | -- | -- |
| 27.32 | 0.243 | 12.3 | -- | -- | -0.399 | -- | -- | 0.0068 | -- | 28.4 | 3914 | -- | -- |
| 32.86 | 0.268 | 12.3 | -- | -- | -- | -- | -- | 0.0166 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.18 | temperature | 30 | 270 | < th | dose independent | rect. | 20 | 18 |
| 2 | 13.28 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 16 |
| 6 | 13.36 | humidity | 60 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 7 | 13.37 | humidity | 60 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 11 | 13.49 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 20 |
| 14 | 13.50 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 20 |
| 19 | 13.51 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 8 |
| 74 | 13.52 | temperature | 30 | 14400 | > th | dose independent | sin | 22 | NA |
| 81 | 13.52 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |
| 82 | 13.52 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 83 | 13.52 | temperature | 30 | 14400 | > th | dose independent | rect. | 13 | 3 |
| 86 | 13.52 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 9 |
| 218 | 13.53 | temperature | 30 | 14400 | > th | dose independent | sin | 10 | NA |
| 220 | 13.53 | temperature | 30 | 14400 | > th | dose independent | sin | 19 | NA |
| 225 | 13.53 | temperature | 30 | 14400 | < th | dose independent | sin | 23 | NA |
| 228 | 13.53 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 229 | 13.53 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 232 | 13.53 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 376 | 13.54 | temperature | 30 | 14400 | > th | dose independent | sin | 17 | NA |
| 378 | 13.54 | temperature | 30 | 14400 | < th | dose independent | sin | 11 | NA |
| 379 | 13.54 | temperature | 30 | 14400 | < th | dose independent | sin | 18 | NA |
| 387 | 13.54 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 388 | 13.54 | radiation | 40 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 434 | 13.54 | temperature | 30 | 14400 | < th | dose independent | rect. | 12 | 15 |
| 478 | 13.55 | temperature | 30 | 14400 | > th | dose independent | sin | 15 | NA |
| 481 | 13.55 | temperature | 30 | 14400 | < th | dose independent | sin | 16 | NA |
| 485 | 13.55 | temperature | 30 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 486 | 13.55 | radiation | 40 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 620 | 13.55 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 2 |
| 644 | 13.56 | humidity | 80 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 673 | 13.56 | temperature | 20 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 679 | 13.57 | humidity | 70 | 14400 | < th | dose independent | rect. | 10 | 5 |
| 686 | 13.57 | humidity | 90 | 43200 | > th | dose dependent | rect. | 15 | 2 |
| 731 | 13.58 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 7 |
| 733 | 13.58 | wind | 1 | 43200 | < th | dose dependent | rect. | 3 | 9 |
| 770 | 13.59 | radiation | 40 | 4320 | < th | dose independent | rect. | 14 | 15 |
| 779 | 13.59 | temperature | 30 | 14400 | > th | dose dependent | sin | 7 | NA |
| 781 | 13.59 | temperature | 30 | 14400 | > th | dose dependent | sin | 5 | NA |
| 786 | 13.59 | temperature | 30 | 14400 | > th | dose dependent | rect. | 12 | 3 |
| 845 | 13.60 | temperature | 30 | 14400 | > th | dose dependent | sin | 3 | NA |
| 850 | 13.60 | temperature | 30 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 851 | 13.60 | temperature | 30 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 908 | 13.61 | radiation | 40 | 4320 | < th | dose independent | rect. | 14 | 12 |
| 913 | 13.61 | temperature | 30 | 14400 | > th | dose dependent | sin | 1 | NA |
| 946 | 13.62 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 959 | 13.62 | radiation | 1 | 270 | > th | dose independent | rect. | 7 | 8 |
| 974 | 13.62 | temperature | 30 | 14400 | > th | dose dependent | sin | 23 | NA |