BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0390000 Os04g0390000|AK098921
         (1001 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0390000  Similar to 2-oxoglutarate dehydrogenase, E1 co...  2030   0.0  
Os07g0695800  Similar to 2-oxoglutarate dehydrogenase, E1 co...  1752   0.0  

>Os04g0390000 Similar to 2-oxoglutarate dehydrogenase, E1 component
          Length = 1001

 Score = 2030 bits (5259), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 976/1001 (97%), Positives = 976/1001 (97%)

Query: 1    VRNLARAPANPFAGPAPRYFHSTXXXXXXXXXXXXXXLSRLTDSFLDGTSSVYLEELQRA 60
            VRNLARAPANPFAGPAPRYFHST              LSRLTDSFLDGTSSVYLEELQRA
Sbjct: 1    VRNLARAPANPFAGPAPRYFHSTRPRRFAAPVPRAVPLSRLTDSFLDGTSSVYLEELQRA 60

Query: 61   WEADPTSVDESWDNFFRNFVGQAATSPGISGQTIQESMRLLLLVRAYQVSGHLKAKLDPL 120
            WEADPTSVDESWDNFFRNFVGQAATSPGISGQTIQESMRLLLLVRAYQVSGHLKAKLDPL
Sbjct: 61   WEADPTSVDESWDNFFRNFVGQAATSPGISGQTIQESMRLLLLVRAYQVSGHLKAKLDPL 120

Query: 121  ALEERPIPDVLDPAFYGFSEADLDREFFLGVWRMAGFLSENRPVQTLRSVLERLEQAYCG 180
            ALEERPIPDVLDPAFYGFSEADLDREFFLGVWRMAGFLSENRPVQTLRSVLERLEQAYCG
Sbjct: 121  ALEERPIPDVLDPAFYGFSEADLDREFFLGVWRMAGFLSENRPVQTLRSVLERLEQAYCG 180

Query: 181  TIGYEYMHIPDREKCNWLRDRIETVNAREYSYDRRQVMLDRLMWSTQFESFLAQKWTTAK 240
            TIGYEYMHIPDREKCNWLRDRIETVNAREYSYDRRQVMLDRLMWSTQFESFLAQKWTTAK
Sbjct: 181  TIGYEYMHIPDREKCNWLRDRIETVNAREYSYDRRQVMLDRLMWSTQFESFLAQKWTTAK 240

Query: 241  RFGLEGAETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGG 300
            RFGLEGAETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGG
Sbjct: 241  RFGLEGAETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGG 300

Query: 301  TKPAEEGEGLYTGTGDVKYHLGTSYDRPTRGGKHIHLSLVANPSHLEAVDPVVAGKTRAK 360
            TKPAEEGEGLYTGTGDVKYHLGTSYDRPTRGGKHIHLSLVANPSHLEAVDPVVAGKTRAK
Sbjct: 301  TKPAEEGEGLYTGTGDVKYHLGTSYDRPTRGGKHIHLSLVANPSHLEAVDPVVAGKTRAK 360

Query: 361  QYYSNDLDRTKNLGVLLHGDGSFSGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAFTTD 420
            QYYSNDLDRTKNLGVLLHGDGSFSGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAFTTD
Sbjct: 361  QYYSNDLDRTKNLGVLLHGDGSFSGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAFTTD 420

Query: 421  PRAGRSSQYCTDVAKALDAPIFHVNGDDLEAVVHVCELAAEWRQTFHSDVVVDIVCYRRF 480
            PRAGRSSQYCTDVAKALDAPIFHVNGDDLEAVVHVCELAAEWRQTFHSDVVVDIVCYRRF
Sbjct: 421  PRAGRSSQYCTDVAKALDAPIFHVNGDDLEAVVHVCELAAEWRQTFHSDVVVDIVCYRRF 480

Query: 481  GHNEIDEPSFTQPKMYKIIRNHQSALEIYQNRLLESGKISKEDIDKMQKKVSTILNDEFQ 540
            GHNEIDEPSFTQPKMYKIIRNHQSALEIYQNRLLESGKISKEDIDKMQKKVSTILNDEFQ
Sbjct: 481  GHNEIDEPSFTQPKMYKIIRNHQSALEIYQNRLLESGKISKEDIDKMQKKVSTILNDEFQ 540

Query: 541  NSKEYIPNKRDWLSAYWTGFKSPEQISRIRNTGVKPEILKRVGEAMTTLPENFKPHRAVK 600
            NSKEYIPNKRDWLSAYWTGFKSPEQISRIRNTGVKPEILKRVGEAMTTLPENFKPHRAVK
Sbjct: 541  NSKEYIPNKRDWLSAYWTGFKSPEQISRIRNTGVKPEILKRVGEAMTTLPENFKPHRAVK 600

Query: 601  KIFELRRQMIETGEGIDWAVGEALAFATLIIEGNHVRLSGQDVERGTFSHRHAVIHDQET 660
            KIFELRRQMIETGEGIDWAVGEALAFATLIIEGNHVRLSGQDVERGTFSHRHAVIHDQET
Sbjct: 601  KIFELRRQMIETGEGIDWAVGEALAFATLIIEGNHVRLSGQDVERGTFSHRHAVIHDQET 660

Query: 661  GEQYCPLDNLVMNQDEELFTVSNSSLSEFAVLGFELGYSMENPNSLVLWEAQFGDFSNGA 720
            GEQYCPLDNLVMNQDEELFTVSNSSLSEFAVLGFELGYSMENPNSLVLWEAQFGDFSNGA
Sbjct: 661  GEQYCPLDNLVMNQDEELFTVSNSSLSEFAVLGFELGYSMENPNSLVLWEAQFGDFSNGA 720

Query: 721  QVIFDQFLSSGEAKWLRQTGLVVCLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDP 780
            QVIFDQFLSSGEAKWLRQTGLVVCLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDP
Sbjct: 721  QVIFDQFLSSGEAKWLRQTGLVVCLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDP 780

Query: 781  TLRKQIQQCNWQVVNVTTPANYFHVLRRQIHRDFRKPLIVMSPKNLLRHKDCKSNLSEFD 840
            TLRKQIQQCNWQVVNVTTPANYFHVLRRQIHRDFRKPLIVMSPKNLLRHKDCKSNLSEFD
Sbjct: 781  TLRKQIQQCNWQVVNVTTPANYFHVLRRQIHRDFRKPLIVMSPKNLLRHKDCKSNLSEFD 840

Query: 841  DLAGHPGFDKQGTRFKRLIKDQNNHKDLEEGIKRLVLCSGKVYYELXXXXXXXXXXXVAI 900
            DLAGHPGFDKQGTRFKRLIKDQNNHKDLEEGIKRLVLCSGKVYYEL           VAI
Sbjct: 841  DLAGHPGFDKQGTRFKRLIKDQNNHKDLEEGIKRLVLCSGKVYYELDEERRKKERDDVAI 900

Query: 901  CRVEQLCPFPYDLIQRELKRYPNAEIVWCQEEPMNMGAYSYINPRLLTAMRALGRGTIDD 960
            CRVEQLCPFPYDLIQRELKRYPNAEIVWCQEEPMNMGAYSYINPRLLTAMRALGRGTIDD
Sbjct: 901  CRVEQLCPFPYDLIQRELKRYPNAEIVWCQEEPMNMGAYSYINPRLLTAMRALGRGTIDD 960

Query: 961  IKYVGRAPSAATATGFYSVHVQEQTELVQKALQRDPINSPF 1001
            IKYVGRAPSAATATGFYSVHVQEQTELVQKALQRDPINSPF
Sbjct: 961  IKYVGRAPSAATATGFYSVHVQEQTELVQKALQRDPINSPF 1001



>Os07g0695800 Similar to 2-oxoglutarate dehydrogenase, E1 component
          Length = 1008

 Score = 1752 bits (4538), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 822/987 (83%), Positives = 905/987 (91%), Gaps = 2/987 (0%)

Query: 16   APRYFHSTXXX-XXXXXXXXXXXLSRLTDSFLDGTSSVYLEELQRAWEADPTSVDESWDN 74
            A R+FHS                LSRLTDSFLDGTSSVYLEELQRAWEADP+SVDESWDN
Sbjct: 22   ASRFFHSARPAWRSSAPVPRAVPLSRLTDSFLDGTSSVYLEELQRAWEADPSSVDESWDN 81

Query: 75   FFRNFVGQAA-TSPGISGQTIQESMRLLLLVRAYQVSGHLKAKLDPLALEERPIPDVLDP 133
            FFRNF+GQAA +S G+SGQTIQESM+LLLLVRAYQV+GH+KAKLDPL L++R +PD LD 
Sbjct: 82   FFRNFLGQAAPSSAGLSGQTIQESMQLLLLVRAYQVNGHMKAKLDPLRLDDRAVPDDLDL 141

Query: 134  AFYGFSEADLDREFFLGVWRMAGFLSENRPVQTLRSVLERLEQAYCGTIGYEYMHIPDRE 193
            + YGF+EADLDREFFLGVWRMAGFLS+NRPV TLR +L +LEQAYCG IGYEYMHIPDR+
Sbjct: 142  SLYGFTEADLDREFFLGVWRMAGFLSDNRPVLTLREILSKLEQAYCGPIGYEYMHIPDRD 201

Query: 194  KCNWLRDRIETVNAREYSYDRRQVMLDRLMWSTQFESFLAQKWTTAKRFGLEGAETLIPG 253
            KCNWLRD+IET   +EY+ DRR VMLDRL+WSTQFE+FLA KW TAKRFGLEG ETLIPG
Sbjct: 202  KCNWLRDKIETAKLKEYNKDRRLVMLDRLIWSTQFENFLATKWATAKRFGLEGGETLIPG 261

Query: 254  MKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTKPAEEGEGLYTG 313
            MKEMFDRAADLGVE+IVIGMPHRGRLNVLGNVVRKPL QIFSEF+GGT+P E  +GLYTG
Sbjct: 262  MKEMFDRAADLGVENIVIGMPHRGRLNVLGNVVRKPLSQIFSEFTGGTRPVEGEDGLYTG 321

Query: 314  TGDVKYHLGTSYDRPTRGGKHIHLSLVANPSHLEAVDPVVAGKTRAKQYYSNDLDRTKNL 373
            TGDVKYHLGTSYDRPTRGGK IHLSLVANPSHLEAVDPVV GKTRAKQ+YSNDLDRTKN+
Sbjct: 322  TGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQFYSNDLDRTKNM 381

Query: 374  GVLLHGDGSFSGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAFTTDPRAGRSSQYCTDV 433
            G+L+HGDGSF+GQGVVYETLHLSALP+YTTGGTIHIVVNNQVAFTTDPRAGRSSQYCTDV
Sbjct: 382  GILIHGDGSFAGQGVVYETLHLSALPSYTTGGTIHIVVNNQVAFTTDPRAGRSSQYCTDV 441

Query: 434  AKALDAPIFHVNGDDLEAVVHVCELAAEWRQTFHSDVVVDIVCYRRFGHNEIDEPSFTQP 493
            AKAL+APIFHVNGDDLEAVV VCELAAEWRQTFHSDVVVD++CYRRFGHNEIDEPSFTQP
Sbjct: 442  AKALNAPIFHVNGDDLEAVVRVCELAAEWRQTFHSDVVVDLICYRRFGHNEIDEPSFTQP 501

Query: 494  KMYKIIRNHQSALEIYQNRLLESGKISKEDIDKMQKKVSTILNDEFQNSKEYIPNKRDWL 553
            KMY++I+NH S+L++Y+ +LL +G++SKED+ K+ +KV+ ILN+EF  SK+Y+PNKRDWL
Sbjct: 502  KMYQVIKNHPSSLKLYEQKLLGTGEVSKEDVQKIHEKVNRILNEEFAKSKDYVPNKRDWL 561

Query: 554  SAYWTGFKSPEQISRIRNTGVKPEILKRVGEAMTTLPENFKPHRAVKKIFELRRQMIETG 613
            SAYWTGFKSPEQISR+RNTGV P +LKRVG+A+TTLPE+FKPHRAVKKIFE R  MIE+G
Sbjct: 562  SAYWTGFKSPEQISRVRNTGVNPGVLKRVGQAITTLPEDFKPHRAVKKIFEQRAAMIESG 621

Query: 614  EGIDWAVGEALAFATLIIEGNHVRLSGQDVERGTFSHRHAVIHDQETGEQYCPLDNLVMN 673
            EGIDWAV EALAFATLI+EGNHVRLSGQDVERGTFSHRHAV+HDQE G ++CPLD++VMN
Sbjct: 622  EGIDWAVAEALAFATLIVEGNHVRLSGQDVERGTFSHRHAVLHDQENGRKHCPLDHVVMN 681

Query: 674  QDEELFTVSNSSLSEFAVLGFELGYSMENPNSLVLWEAQFGDFSNGAQVIFDQFLSSGEA 733
            Q+EELFTVSNSSLSEFAVLGFE+GYSMENPNSLVLWEAQFGDFSNGAQV+FDQFLSSGEA
Sbjct: 682  QNEELFTVSNSSLSEFAVLGFEMGYSMENPNSLVLWEAQFGDFSNGAQVMFDQFLSSGEA 741

Query: 734  KWLRQTGLVVCLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDPTLRKQIQQCNWQV 793
            KWLRQTGLVV LPHGYDGQGPEHSSARLERFLQMSDDNP+VIPEM+PTLRKQIQ+CNWQV
Sbjct: 742  KWLRQTGLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMEPTLRKQIQECNWQV 801

Query: 794  VNVTTPANYFHVLRRQIHRDFRKPLIVMSPKNLLRHKDCKSNLSEFDDLAGHPGFDKQGT 853
            VNVTTPANYFHVLRRQIHR+FRKPLIVM+PKNLLRHKDCKSNLSEFDD+ GHPGFDKQGT
Sbjct: 802  VNVTTPANYFHVLRRQIHREFRKPLIVMAPKNLLRHKDCKSNLSEFDDVEGHPGFDKQGT 861

Query: 854  RFKRLIKDQNNHKDLEEGIKRLVLCSGKVYYELXXXXXXXXXXXVAICRVEQLCPFPYDL 913
            RFKRLIKD+N+HK +EEGIKRLVLCSGKVYYEL           VAICRVEQLCPFPYDL
Sbjct: 862  RFKRLIKDRNDHKQVEEGIKRLVLCSGKVYYELDEERKKTERSDVAICRVEQLCPFPYDL 921

Query: 914  IQRELKRYPNAEIVWCQEEPMNMGAYSYINPRLLTAMRALGRGTIDDIKYVGRAPSAATA 973
            IQRELKRYPNAEIVWCQEEPMNMGAYSYI+PRL  +M+ LGRG+ DDIKYVGRAPSAATA
Sbjct: 922  IQRELKRYPNAEIVWCQEEPMNMGAYSYISPRLYASMKTLGRGSFDDIKYVGRAPSAATA 981

Query: 974  TGFYSVHVQEQTELVQKALQRDPINSP 1000
            TGF SVH QEQTELV+KALQ +PI  P
Sbjct: 982  TGFLSVHAQEQTELVKKALQAEPIKFP 1008



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 35,091,923
Number of extensions: 1541070
Number of successful extensions: 2865
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2862
Number of HSP's successfully gapped: 2
Length of query: 1001
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 890
Effective length of database: 11,240,047
Effective search space: 10003641830
Effective search space used: 10003641830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 161 (66.6 bits)