Os07g0695800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 2-oxoglutarate dehydrogenase, E1 component.
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Os07g0695800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 2-oxoglutarate dehydrogenase, E1 component.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.9 | 0.351 | 11.2 | 0.918 | 0.971 | -1.61 | -0.532 | 1.69 | 0.42 | 22.9 | 16.27 | 709 | -- | -- |
| 58.14 | 0.355 | 11.2 | 0.691 | 0.993 | -1.56 | -0.185 | -- | 0.347 | 23 | 15.99 | 742 | -- | -- |
| 56.93 | 0.351 | 11.2 | 0.878 | 0.958 | -1.65 | -- | 1.46 | 0.402 | 22.7 | 16.01 | 648 | -- | -- |
| 58.01 | 0.355 | 11.2 | 0.627 | 0.98 | -1.69 | -- | -- | 0.337 | 23 | 12.09 | 737 | -- | -- |
| 71.23 | 0.395 | 11.2 | 0.822 | -- | -1.77 | -- | 1.83 | 0.41 | -- | 16.01 | 648 | -- | -- |
| 93.64 | 0.454 | 11.3 | 0.179 | 0.694 | -- | -0.398 | -- | 0.0721 | 0.315 | -- | -- | -- | -- |
| 94.32 | 0.455 | 11.3 | 0.195 | 0.695 | -- | -- | -- | 0.0742 | 0.283 | -- | -- | -- | -- |
| 74.3 | 0.403 | 11.2 | 0.557 | -- | -1.86 | -- | -- | 0.335 | -- | 12.09 | 737 | -- | -- |
| 67 | 0.381 | 11.2 | -- | 0.927 | -1.35 | -- | -- | 0.231 | 23.1 | 15.78 | 716 | -- | -- |
| 124.71 | 0.522 | 11.3 | 0.218 | -- | -- | -- | -- | 0.085 | -- | -- | -- | -- | -- |
| 95.32 | 0.457 | 11.3 | -- | 0.698 | -- | -- | -- | 0.0525 | 0.298 | -- | -- | -- | -- |
| 81.68 | 0.422 | 11.2 | -- | -- | -1.45 | -- | -- | 0.253 | -- | 18.07 | 8 | -- | -- |
| 125.96 | 0.524 | 11.3 | -- | -- | -- | -- | -- | 0.0608 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.96 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 14 | 55.07 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 23 | 55.31 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 37 | 55.58 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 58 | 56.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 62 | 56.10 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 65 | 56.11 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 75 | 56.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 17 |
| 107 | 56.52 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 120 | 56.59 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 122 | 56.62 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 9 |
| 124 | 56.63 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 164 | 56.82 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 12 |
| 184 | 56.91 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 13 |
| 235 | 57.15 | temperature | 20 | 1440 | > th | dose dependent | sin | 18 | NA |
| 413 | 57.93 | temperature | 25 | 1440 | < th | dose independent | sin | 19 | NA |
| 427 | 58.00 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 22 |
| 432 | 58.05 | temperature | 25 | 1440 | > th | dose independent | sin | 19 | NA |
| 476 | 58.17 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 22 |
| 756 | 58.65 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 12 |
| 816 | 58.72 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 23 |
| 872 | 58.78 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 883 | 58.78 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 919 | 58.83 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 18 |
| 994 | 58.97 | temperature | 30 | 1440 | < th | dose dependent | sin | 18 | NA |