BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0691300 Os07g0691300|AK069499
         (99 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0691300  Wound-induced WI12 family protein                   153   2e-38
Os03g0299600  Wound-induced WI12 family protein                    62   6e-11

>Os07g0691300 Wound-induced WI12 family protein
          Length = 99

 Score =  153 bits (387), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 76/87 (87%), Positives = 76/87 (87%)

Query: 1  MMRLLTGCAXXXXXXXXXXXLSVHALPASDVVIAEGITGRYHDSYWVHAWTVGPGPNGDR 60
          MMRLLTGCA           LSVHALPASDVVIAEGITGRYHDSYWVHAWTVGPGPNGDR
Sbjct: 1  MMRLLTGCASPSSSSFRFRPLSVHALPASDVVIAEGITGRYHDSYWVHAWTVGPGPNGDR 60

Query: 61 VITHLREYLNTDLTVTRLPPTRCLWQS 87
          VITHLREYLNTDLTVTRLPPTRCLWQS
Sbjct: 61 VITHLREYLNTDLTVTRLPPTRCLWQS 87



>Os03g0299600 Wound-induced WI12 family protein
          Length = 228

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 46/78 (58%), Gaps = 8/78 (10%)

Query: 1   MMRLLTGCAXXXXXXXXXXXLSVHALPASDVVIAEGITGRYHDSYWVHAWTVGPGPNGDR 60
           MMRLLTG A            SV A  ++  VIAEG T      YWVHAWTVGP    D 
Sbjct: 105 MMRLLTG-ADHGESRFLFSPRSVDAFGST--VIAEG-TDDTRQLYWVHAWTVGP----DG 156

Query: 61  VITHLREYLNTDLTVTRL 78
           VIT LREY NTDLTVTRL
Sbjct: 157 VITQLREYFNTDLTVTRL 174



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.137    0.465 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,287,068
Number of extensions: 123587
Number of successful extensions: 144
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 2
Length of query: 99
Length of database: 17,035,801
Length adjustment: 68
Effective length of query: 31
Effective length of database: 13,485,249
Effective search space: 418042719
Effective search space used: 418042719
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 149 (62.0 bits)