BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0689900 Os07g0689900|Os07g0689900
(1335 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0689900 BRCT domain containing protein 2695 0.0
Os03g0304400 BRCT domain containing protein 786 0.0
>Os07g0689900 BRCT domain containing protein
Length = 1335
Score = 2695 bits (6986), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1298/1335 (97%), Positives = 1298/1335 (97%)
Query: 1 MPAHGGQDADNRRLFAGVRFALLGFDPVSESQYRSEMVQRGGVDAGAYGAGCTHLIVCDL 60
MPAHGGQDADNRRLFAGVRFALLGFDPVSESQYRSEMVQRGGVDAGAYGAGCTHLIVCDL
Sbjct: 1 MPAHGGQDADNRRLFAGVRFALLGFDPVSESQYRSEMVQRGGVDAGAYGAGCTHLIVCDL 60
Query: 61 LYDNPICVAARKDGTKVVSEQWVDDSLDLGEMADADRVLYRPVRDFSGIPGSQSLRICLT 120
LYDNPICVAARKDGTKVVSEQWVDDSLDLGEMADADRVLYRPVRDFSGIPGSQSLRICLT
Sbjct: 61 LYDNPICVAARKDGTKVVSEQWVDDSLDLGEMADADRVLYRPVRDFSGIPGSQSLRICLT 120
Query: 121 GYQKNWRDDIMKMASLMGAEFSKSFDALKDTHLICYKFEGEKYKVAKRENTAKRANVSLV 180
GYQKNWRDDIMKMASLMGAEFSKSFDALKDTHLICYKFEGEKYKVAKRENTAKRANVSLV
Sbjct: 121 GYQKNWRDDIMKMASLMGAEFSKSFDALKDTHLICYKFEGEKYKVAKRENTAKRANVSLV 180
Query: 181 NHQWLEDCLMAWKILPADDYTKSGWEIEIMAAQAKDSEDDEEEAGRSSSHSKRATRSART 240
NHQWLEDCLMAWKILPADDYTKSGWEIEIMAAQAKDSEDDEEEAGRSSSHSKRATRSART
Sbjct: 181 NHQWLEDCLMAWKILPADDYTKSGWEIEIMAAQAKDSEDDEEEAGRSSSHSKRATRSART 240
Query: 241 KDIRMATLVDPHSQAPTRDPTISSCSAEITAGGHMSTPERITKAGGSTSRSLNIKSDIRN 300
KDIRMATLVDPHSQAPTRDPTISSCSAEITAGGHMSTPERITKAGGSTSRSLNIKSDIRN
Sbjct: 241 KDIRMATLVDPHSQAPTRDPTISSCSAEITAGGHMSTPERITKAGGSTSRSLNIKSDIRN 300
Query: 301 TPISADSDAYESAHFPLNGKEEAPAAQVHRAEAKDDVKMAVDASPGAHCISNIAGTTVCS 360
TPISADSDAYESAHFPLNGKEEAPAAQVHRAEAKDDVKMAVDASPGAHCISNIAGTTVCS
Sbjct: 301 TPISADSDAYESAHFPLNGKEEAPAAQVHRAEAKDDVKMAVDASPGAHCISNIAGTTVCS 360
Query: 361 DHHVHQSTTAPAMLVDKTETIGGNCLDSSNQNNVNIALWSTPSKETFSEKTLRPSGISGN 420
DHHVHQSTTAPAMLVDKTETIGGNCLDSSNQNNVNIALWSTPSKETFSEKTLRPSGISGN
Sbjct: 361 DHHVHQSTTAPAMLVDKTETIGGNCLDSSNQNNVNIALWSTPSKETFSEKTLRPSGISGN 420
Query: 421 VGQKDGGSTPDLNTAVDQSNTARELTLCEANLRLTGNAASKKNSQVLSYNRRRCRKSVSP 480
VGQKDGGSTPDLNTAVDQSNTARELTLCEANLRLTGNAASKKNSQVLSYNRRRCRKSVSP
Sbjct: 421 VGQKDGGSTPDLNTAVDQSNTARELTLCEANLRLTGNAASKKNSQVLSYNRRRCRKSVSP 480
Query: 481 EANLKPTGSPQSFEGVTPRVDFTISPSMKSDHKISDITDAESLRDVEIVKKVNKSSGALA 540
EANLKPTGSPQSFEGVTPRVDFTISPSMKSDHKISDITDAESLRDVEIVKKVNKSSGALA
Sbjct: 481 EANLKPTGSPQSFEGVTPRVDFTISPSMKSDHKISDITDAESLRDVEIVKKVNKSSGALA 540
Query: 541 QKRASKLSSISMKPSVSSETGTANSPFSSRESASEAATFSDPSRNSAESVILTAKEKSGQ 600
QKRASKLSSISMKPSVSSETGTANSPFSSRESASEAATFSDPSRNSAESVILTAKEKSGQ
Sbjct: 541 QKRASKLSSISMKPSVSSETGTANSPFSSRESASEAATFSDPSRNSAESVILTAKEKSGQ 600
Query: 601 SKSNLLSYRRALKLARPVEGEKLSENSTKSKKSLRENTLALHEVDKGGSSSENGLRSEKG 660
SKSNLLSYRRALKLARPVEGEKLSENSTKSKKSLRENTLALHEVDKGGSSSENGLRSEKG
Sbjct: 601 SKSNLLSYRRALKLARPVEGEKLSENSTKSKKSLRENTLALHEVDKGGSSSENGLRSEKG 660
Query: 661 CAANXXXXXXXXXXXXXXXLQNRDTEMSDVPQVDKTEVVAPNTDFAIVVSHQNMEVVPKS 720
CAAN LQNRDTEMSDVPQVDKTEVVAPNTDFAIVVSHQNMEVVPKS
Sbjct: 661 CAANSSADSEVDKRSSSSSLQNRDTEMSDVPQVDKTEVVAPNTDFAIVVSHQNMEVVPKS 720
Query: 721 IQVTATISECETFPQEEPTSKVKNASVKRFGNASNKAATRSVKNKDEIVSFKSDGDKVEV 780
IQVTATISECETFPQEEPTSKVKNASVKRFGNASNKAATRSVKNKDEIVSFKSDGDKVEV
Sbjct: 721 IQVTATISECETFPQEEPTSKVKNASVKRFGNASNKAATRSVKNKDEIVSFKSDGDKVEV 780
Query: 781 QPEKNHARPNGAECTVFIPEEIPNSKXXXXXXXXSRDALQMNTALALSKTELAEKNPGSA 840
QPEKNHARPNGAECTVFIPEEIPNSK SRDALQMNTALALSKTELAEKNPGSA
Sbjct: 781 QPEKNHARPNGAECTVFIPEEIPNSKANNAATNNSRDALQMNTALALSKTELAEKNPGSA 840
Query: 841 SADEYRKSSCEKVSQTADVEMPDAPIVDSTGAMFSKSGFKEVFPPENAGSCPKRLSTNTN 900
SADEYRKSSCEKVSQTADVEMPDAPIVDSTGAMFSKSGFKEVFPPENAGSCPKRLSTNTN
Sbjct: 841 SADEYRKSSCEKVSQTADVEMPDAPIVDSTGAMFSKSGFKEVFPPENAGSCPKRLSTNTN 900
Query: 901 MGGPETCTPSIVPNNXXXXXXXXXXXXXXQQNSFGDVPCKNSSAVVSEFKFVYKRASEGP 960
MGGPETCTPSIVPNN QQNSFGDVPCKNSSAVVSEFKFVYKRASEGP
Sbjct: 901 MGGPETCTPSIVPNNRVRKAAAKRKVSAVQQNSFGDVPCKNSSAVVSEFKFVYKRASEGP 960
Query: 961 RNGSKKTMDQNLQSSNEDGARDAGVSFSEDDMRDRSKILQNSQARSSKRQKAADLMDGST 1020
RNGSKKTMDQNLQSSNEDGARDAGVSFSEDDMRDRSKILQNSQARSSKRQKAADLMDGST
Sbjct: 961 RNGSKKTMDQNLQSSNEDGARDAGVSFSEDDMRDRSKILQNSQARSSKRQKAADLMDGST 1020
Query: 1021 DHDKENLPGNHNISKSKYGNSCTSLNSFIQAAGSGKDRLADRGVVEENDCGMLTVLEPRL 1080
DHDKENLPGNHNISKSKYGNSCTSLNSFIQAAGSGKDRLADRGVVEENDCGMLTVLEPRL
Sbjct: 1021 DHDKENLPGNHNISKSKYGNSCTSLNSFIQAAGSGKDRLADRGVVEENDCGMLTVLEPRL 1080
Query: 1081 FILSGHRLLRKEYKLILRRLKGRVCRDSHQWSFQATHFISPELRRTEKFFAAAAAGRWIL 1140
FILSGHRLLRKEYKLILRRLKGRVCRDSHQWSFQATHFISPELRRTEKFFAAAAAGRWIL
Sbjct: 1081 FILSGHRLLRKEYKLILRRLKGRVCRDSHQWSFQATHFISPELRRTEKFFAAAAAGRWIL 1140
Query: 1141 KSDYLTACNEAGKFLEEEPFEWHGNGLNNGDTISLDAPRKWRQLRQHTGHGAFYGMQIII 1200
KSDYLTACNEAGKFLEEEPFEWHGNGLNNGDTISLDAPRKWRQLRQHTGHGAFYGMQIII
Sbjct: 1141 KSDYLTACNEAGKFLEEEPFEWHGNGLNNGDTISLDAPRKWRQLRQHTGHGAFYGMQIII 1200
Query: 1201 YGECISPSLDTLKRAVRAGDGTILATSPPYTRFLKKPDHVDFAVVSAGTPSADAWVEEFK 1260
YGECISPSLDTLKRAVRAGDGTILATSPPYTRFLKKPDHVDFAVVSAGTPSADAWVEEFK
Sbjct: 1201 YGECISPSLDTLKRAVRAGDGTILATSPPYTRFLKKPDHVDFAVVSAGTPSADAWVEEFK 1260
Query: 1261 RQGIPCISADYLVEYICKPGQSLNKHVLFNMHDLADKSHAKLLKGQLDDVLGEATEAMQL 1320
RQGIPCISADYLVEYICKPGQSLNKHVLFNMHDLADKSHAKLLKGQLDDVLGEATEAMQL
Sbjct: 1261 RQGIPCISADYLVEYICKPGQSLNKHVLFNMHDLADKSHAKLLKGQLDDVLGEATEAMQL 1320
Query: 1321 NQLVRLVDPTTGKED 1335
NQLVRLVDPTTGKED
Sbjct: 1321 NQLVRLVDPTTGKED 1335
>Os03g0304400 BRCT domain containing protein
Length = 1462
Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 547/1409 (38%), Positives = 761/1409 (54%), Gaps = 143/1409 (10%)
Query: 6 GQDADNRRLFAGVRFALLGFDPVSESQYRSEMVQRGGVDAGAYGAGCTHLIVCDLLYDNP 65
G D D+ LFAGVRF L+GFDP+SESQYRSEMV+R GVDAG +G+GCTH+IVC L+YD+P
Sbjct: 7 GSDDDDEHLFAGVRFFLVGFDPLSESQYRSEMVRRSGVDAGRFGSGCTHVIVCGLVYDDP 66
Query: 66 ICVAARKDGTKVVSEQWVDDSLDLGEMADADRVLYRPVRDFSGIPGSQSLRICLTGYQKN 125
CVAAR +G KVV+E WV+ SLD G +ADADRV+Y PVRD +GI GS+SLRICLTGYQ++
Sbjct: 67 ACVAARAEGKKVVTELWVEASLDRGMLADADRVMYWPVRDLNGIAGSESLRICLTGYQRS 126
Query: 126 WRDDIMKMASLMGAEFSKSFDALKDTHLICYKFEGEKYKVAKRENTAKRANVSLVNHQWL 185
R+DIM M SLMGA+FSKS + THLICYKFEGEKY+ AK+ N+ LVNH+WL
Sbjct: 127 DREDIMSMVSLMGAQFSKSLNPDVVTHLICYKFEGEKYEAAKKAKLKFNFNIKLVNHRWL 186
Query: 186 EDCLMAWKILPADDYTKSGWEIEIMAAQAKDSEDDEEEAGRSSSHSKRATRSARTKDIRM 245
EDCL WKILP DDY+KS WE+EIM AQAKDSED+E+ RS + RS
Sbjct: 187 EDCLKCWKILPVDDYSKSSWELEIMEAQAKDSEDEEDVGQRS--FRNKIVRSTLNPKGSA 244
Query: 246 ATLVDPHSQAPTRDPTISSCSAEITAGGHMSTPERITKAGGSTSRSLNIKSDIRNTP--- 302
T +P AP R PTISS + + + P I KA + +R ++ ++ TP
Sbjct: 245 GTSANPVVNAPIRSPTISSGNIGMVLEKQPNIPGEIRKAEDAVNRIHDVA--VQGTPRTR 302
Query: 303 --ISADSDAYESAHFPL---NGKEEAP------AAQVHRAEAKDDVKMAVDASPGAHCIS 351
+SA++D + P + + +A A Q+ + KD +D + GA
Sbjct: 303 LAMSANTDFSTPSQIPFIHSDSRGDAAVRDLKNADQIQGNKHKDVGTKTLDVTSGASGTP 362
Query: 352 NIAGTTVCSDHHVHQSTTAPAMLVDKTETIGGNCLDSSNQNNVNIALWSTPSKETFSEKT 411
+ V ++H+VH ++KT N ++ + + A +TPS+E
Sbjct: 363 CSSKMVVSANHNVHS--------LNKT-----NFVEDHGDTDASKADLTTPSREILPANV 409
Query: 412 LRPSGISGNVGQKDGGSTPDLNTAVDQSNTARELTLCEANLRLTGNAASKKNSQVLSYNR 471
L S ++ Q+D G+T + A QS +T L+ NA+ N++ +
Sbjct: 410 LDSSNVARGRSQEDYGATCTPDAAAGQSTINDNVTNNNIGLKSGNNASLNINNK---SSL 466
Query: 472 RRCRKSVSPEA-NLKPTGSPQSFEGVTPRVDFTISPSMKSDHKISDITDAESLRDVEIVK 530
+ KSV PE + G Q +G R D +IS + K D I+D+ + L+ E ++
Sbjct: 467 KPLEKSVLPEQYSANRIGPLQGADGSMMRSDSSISTARKGDKIIADLAGVQVLKGGENIQ 526
Query: 531 KVNKSSGALAQKRASKLSSISMKPS---VSSETGTANSPFSSRES-ASEAATFSDPSRNS 586
N GA +QK+ +S + K ETG NSP ++R S SE A +S N
Sbjct: 527 DENVLDGAYSQKKKCSISPVLFKVQNGDTGKETGALNSPSANRLSDTSEPAIWSSVGTNP 586
Query: 587 AESV-ILTAKEKSGQSKSNLLSYRRALKLARPVEGEKLSENSTKSK--------KSLREN 637
+E+ + K++SG SKS R ALK V+G KL E S+ K L
Sbjct: 587 SEANNVDLGKQQSGSSKSR---SRTALKHGNLVDGIKLPEYSSSETNAQPPPKPKELLAT 643
Query: 638 TLA--LHEV-----------------DKGGSSSENG---LRSEKGCAANXXXXXXXXXXX 675
+L+ +H+V D G + +++G +R + A
Sbjct: 644 SLSATVHDVKRCPDFSFQNKDGDYAQDSGNALNQDGSPLMRKTENVLAKVRTSDISLHSS 703
Query: 676 XXXXL----QNRDTEMSDVPQVDKTEV-VAPNTDFAIVVSHQNMEV--VPKSIQVTATIS 728
L N DTEMSD ++K + VA N VV +N++ + + +
Sbjct: 704 RKSKLVPSSGNGDTEMSDALDIEKNKAAVASNCKPEKVVPDENIKADQLKDFPGTSNNVL 763
Query: 729 ECETFPQEEPTSKVKNASVKRFGNAS--------NKAATRSVKNK---DEIVSFKSDGDK 777
+ ++ + K AS KR +AS + T++V ++ D++++ K G+
Sbjct: 764 RQTGYLKKVASRKGMKASTKRPRSASKVVDEPVVDDGKTKTVVSESEPDKMIAHKHIGET 823
Query: 778 VEVQPEKNHA---RPNGAECTVFIP-----------EEIPNSKXXXXXXXXSRDALQMNT 823
+ P+ +A R N ++ + + N + S+ + NT
Sbjct: 824 AKDGPDSVNAAEHRTNSSDKVLTDGASRISRRLQNVHTMKNDRHAASNLESSKMISEENT 883
Query: 824 ALALS--------KTELAEKNPGSASADEYRKSSCEKVSQTADVEMPDAPIVDSTGAMFS 875
+ ++ TE + N + +++ K S+ +D +M D T +
Sbjct: 884 GIGITPKKFVSNATTEGHQTNSPKMLPNTSMRNTFAKRSRVSDTKMTGESSADKTETVAG 943
Query: 876 KSGFKEVFPPENAGSCPKRLSTNTNMGGP-----ETCTPSIVPNNXXXXXXXXXXXXXXQ 930
KS F ++FP +N PK+LS++ + G + +P+ V N
Sbjct: 944 KSLFDDLFPSQNIDH-PKKLSSSASADGCGSLSCKNASPARVRN--AVAKRKIKALEDKS 1000
Query: 931 QNSFGDVPCKNSSAVVSEFKFVYKRA-SEGPRNGSKKTMDQNLQSSNEDGARDAGVSFSE 989
+ G + A+VS K V R E N +K + DQN S DG RD FS
Sbjct: 1001 DSKLGKI----GGAIVSAAKAVASRGIEESSCNINKVSSDQN--SVKTDGMRDVSGLFSS 1054
Query: 990 D-DMRDRSKILQNSQARSSKRQKAADLMDGSTDHDKENLPGNHNISKSKYGNSCTSLNSF 1048
D + DRS+ L NS+ R SKR K+ L DH+KEN+ N +S G + +NS
Sbjct: 1055 DTSVIDRSENLNNSKLRCSKRNKSLSL-----DHEKENMQDNGTLSSKSNGRTAI-MNSN 1108
Query: 1049 IQAAG--SGKDRLADRGVVEENDCGMLTVLEPRLFILSGHRLLRKEYKLILRRLKGRVCR 1106
+ A G + + ++ N G L EP FILSGHR RK+Y+ ILR LK RVCR
Sbjct: 1109 LDANSMKHGANMFNEPNRIKGNGPGTLITPEPTCFILSGHRQQRKDYRSILRCLKARVCR 1168
Query: 1107 DSHQWSFQATHFISPE-LRRTEKFFAAAAAGRWILKSDYLTACNEAGKFLEEEPFEWHGN 1165
DSH WS+QATHFI+P+ L+RTEKFFAAAAAG+WILK+DYLT+CNE GK L+EEPFEW G
Sbjct: 1169 DSHHWSYQATHFIAPDPLKRTEKFFAAAAAGKWILKTDYLTSCNEVGKLLDEEPFEWSGT 1228
Query: 1166 GLNNGDTISLDAPRKWRQLRQHTGHGAFYGMQIIIYGECISPSLDTLKRAVRAGDGTILA 1225
GLN+G+TIS +AP+KWR LRQ GHGAFYGMQII+YG+ +SPSLDT+KRAVR+GDGTILA
Sbjct: 1229 GLNDGETISFEAPKKWRVLRQQMGHGAFYGMQIIVYGQLVSPSLDTVKRAVRSGDGTILA 1288
Query: 1226 TSPPYTRFLKKPDHVDFAVVSAGTPSADAWVEEFKRQGIPCISADYLVEYICKPGQSLNK 1285
TSPPYTRFL VDFAVVS+ PSADAWV++F IPCI+ADYLVEY+CK G L++
Sbjct: 1289 TSPPYTRFLNS--GVDFAVVSSAMPSADAWVQQFISHDIPCITADYLVEYVCKHGHPLDR 1346
Query: 1286 HVLFNMHDLADKSHAKLLKGQLD---DVL 1311
HVLFN +DLA+KS KLL+ Q + DVL
Sbjct: 1347 HVLFNTNDLANKSLKKLLQNQQEVATDVL 1375
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.127 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 45,123,290
Number of extensions: 1909459
Number of successful extensions: 4357
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 4342
Number of HSP's successfully gapped: 3
Length of query: 1335
Length of database: 17,035,801
Length adjustment: 113
Effective length of query: 1222
Effective length of database: 11,135,619
Effective search space: 13607726418
Effective search space used: 13607726418
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 162 (67.0 bits)