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Os03g0304400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : BRCT domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.88 (0.0185) R2 : 0.0763
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.238 (0.0388) R2dN8 : 0.0985 R2N8 : 0.0763
σ : 0.348
deviance : 55.43
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
36.7 0.285 8.84 -0.149 0.26 -0.245 0.242 1.18 0.301 7.53 20.5 336 -- --
41.31 0.299 8.87 -0.344 0.232 -0.279 -0.0503 -- 0.244 6.47 20.5 607 -- --
36.84 0.283 8.85 -0.157 0.26 -0.25 -- 1.12 0.297 7.58 20.54 326 -- --
40.32 0.296 8.89 -0.308 0.26 -0.454 -- -- 0.232 6.38 19.6 617 -- --
40.2 0.295 8.85 -0.126 -- -0.331 -- 1.04 0.32 -- 20.52 462 -- --
45.51 0.316 8.89 -0.472 0.279 -- -0.0725 -- 0.181 7.17 -- -- -- --
45.52 0.316 8.89 -0.474 0.279 -- -- -- 0.182 7.22 -- -- -- --
42.65 0.304 8.87 -0.27 -- -0.565 -- -- 0.292 -- 19.6 536 -- --
39.66 0.293 8.87 -- 0.292 -0.645 -- -- 0.334 7.81 18.55 3360 -- --
49.64 0.329 8.89 -0.469 -- -- -- -- 0.186 -- -- -- -- --
51.43 0.335 8.88 -- 0.274 -- -- -- 0.234 7.33 -- -- -- --
41.95 0.302 8.87 -- -- -0.874 -- -- 0.32 -- 16.5 9535 -- --
55.43 0.348 8.88 -- -- -- -- -- 0.238 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 35.28 wind 1 43200 < th dose dependent rect. 2 1
2 35.42 wind 7 14400 > th dose dependent sin 7 NA
3 35.62 wind 9 14400 < th dose independent rect. 19 1
6 35.79 wind 9 43200 > th dose independent sin 5 NA
8 35.81 wind 9 43200 > th dose independent rect. 22 16
11 35.86 wind 9 43200 > th dose independent rect. 2 12
17 35.88 wind 9 43200 > th dose dependent rect. 9 8
18 35.89 radiation 10 14400 > th dose independent rect. 5 1
32 35.92 wind 9 43200 > th dose dependent rect. 3 14
34 35.93 wind 1 43200 < th dose independent rect. 2 1
44 35.98 wind 9 43200 < th dose independent sin 5 NA
80 36.06 wind 7 14400 < th dose independent sin 7 NA
90 36.10 wind 9 43200 > th dose dependent sin 0 NA
91 36.10 humidity 70 43200 < th dose dependent rect. 10 1
93 36.11 wind 9 43200 < th dose independent rect. 22 16
97 36.12 wind 9 43200 < th dose independent rect. 3 11
99 36.12 wind 9 14400 > th dose independent rect. 18 19
117 36.13 wind 9 43200 > th dose dependent rect. 18 23
129 36.16 wind 7 43200 > th dose dependent sin 4 NA
147 36.22 temperature 20 270 > th dose independent rect. 22 16
152 36.24 wind 1 43200 < th dose dependent rect. 10 1
181 36.30 wind 9 43200 > th dose independent rect. 22 22
184 36.30 wind 9 43200 > th dose dependent rect. 10 23
201 36.33 wind 9 14400 > th dose dependent rect. 14 1
213 36.34 wind 9 43200 > th dose dependent rect. 3 20
219 36.35 wind 9 43200 > th dose dependent no NA NA
240 36.36 wind 1 43200 < th dose independent rect. 10 1
287 36.41 wind 9 43200 > th dose dependent rect. 15 23
289 36.42 temperature 25 4320 < th dose dependent rect. 10 1
296 36.43 wind 9 43200 < th dose independent rect. 22 22
312 36.45 radiation 10 43200 < th dose independent rect. 17 1
329 36.46 wind 1 43200 > th dose independent rect. 2 1
330 36.46 wind 1 43200 > th dose independent rect. 10 1
332 36.46 wind 9 43200 > th dose independent rect. 2 18
340 36.46 wind 9 43200 > th dose dependent rect. 8 15
348 36.47 temperature 20 4320 > th dose independent rect. 18 3
353 36.47 temperature 20 270 < th dose independent rect. 22 21
354 36.47 wind 9 43200 > th dose independent rect. 18 23
370 36.48 humidity 80 43200 < th dose dependent rect. 21 1
383 36.49 wind 1 43200 < th dose dependent rect. 9 3
385 36.50 humidity 60 43200 > th dose independent rect. 2 10
390 36.51 radiation 10 43200 < th dose independent rect. 17 3
392 36.51 temperature 20 4320 > th dose independent rect. 17 5
410 36.52 humidity 60 43200 > th dose independent rect. 18 18
411 36.52 wind 9 43200 > th dose independent rect. 16 22
418 36.53 humidity 60 43200 > th dose independent rect. 21 15
421 36.53 temperature 25 4320 < th dose dependent rect. 9 3
425 36.54 humidity 60 43200 > th dose independent rect. 6 6
441 36.55 wind 9 14400 < th dose independent rect. 18 19
443 36.55 temperature 20 270 > th dose independent rect. 19 21
475 36.58 wind 9 43200 < th dose independent rect. 1 19
499 36.60 temperature 20 30 > th dose independent rect. 19 23
519 36.63 wind 9 43200 > th dose independent rect. 13 22
535 36.66 temperature 20 4320 < th dose independent rect. 18 4
573 36.69 wind 9 43200 < th dose independent rect. 15 20
582 36.70 humidity 60 43200 < th dose independent rect. 20 17
592 36.71 wind 9 43200 < th dose independent rect. 18 23
623 36.75 radiation 20 4320 < th dose independent rect. 17 3
646 36.77 wind 1 43200 > th dose independent rect. 9 4
658 36.78 wind 9 43200 > th dose independent no NA NA
659 36.78 temperature 20 4320 < th dose independent rect. 19 1
661 36.78 radiation 10 43200 < th dose independent rect. 17 14
665 36.78 wind 9 43200 > th dose independent rect. 2 23
677 36.79 radiation 10 4320 > th dose dependent rect. 5 2
695 36.80 humidity 60 43200 < th dose independent rect. 24 13
726 36.82 radiation 10 4320 > th dose dependent rect. 17 15
730 36.83 humidity 60 43200 > th dose independent sin 8 NA
736 36.83 wind 9 43200 > th dose independent rect. 6 23
826 36.88 temperature 10 90 > th dose dependent rect. 19 23
868 36.93 wind 9 14400 > th dose independent rect. 14 1
883 36.94 temperature 20 720 > th dose independent rect. 19 17
917 36.96 radiation 30 43200 < th dose independent rect. 5 3
943 36.97 humidity 60 43200 > th dose independent rect. 10 2
953 36.97 radiation 30 43200 < th dose independent rect. 17 15
959 36.97 wind 9 43200 < th dose independent rect. 2 22
966 36.98 wind 9 43200 < th dose independent no NA NA
968 36.98 radiation 30 43200 < th dose independent rect. 19 13
978 36.98 temperature 15 10 > th dose dependent rect. 20 22
981 36.99 temperature 10 43200 > th dose independent rect. 16 4