BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0304400 Os03g0304400|AK067385
(1462 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G02110.1 | chr4:935191-940191 FORWARD LENGTH=1330 332 9e-91
>AT4G02110.1 | chr4:935191-940191 FORWARD LENGTH=1330
Length = 1329
Score = 332 bits (851), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 153/286 (53%), Positives = 198/286 (69%), Gaps = 7/286 (2%)
Query: 1084 EKENMQ-DNGTLSSKSNGRTAIMNSNLDANSMKHGANMFNEPNRIKGNGPGTLIT----- 1137
EKEN+ DN + S G + + A S K G E +++ N +
Sbjct: 1035 EKENIAVDNESRKVGSGGDQSPVARKKVAKSAKTGTKAEKESKQLRVNPLASRKVFQDQE 1094
Query: 1138 PEPTCFILSGHRQQRKDYRSILRCLKARVCRDSHHWSYQATHFIAPDPLKRTEKFFAAAA 1197
EP FI+SG R QR +Y+ I+R LK + CRDSH WSYQATHFIAP+ ++RTEKFFAAAA
Sbjct: 1095 HEPKFFIVSGPRSQRNEYQQIIRRLKGKCCRDSHQWSYQATHFIAPE-IRRTEKFFAAAA 1153
Query: 1198 AGKWILKTDYLTSCNEVGKLLDEEPFEWSGTGLNDGETISFEAPKKWRVLRQQMGHGAFY 1257
+G WILKTDY+ E GKLL EEP+EW +GL+ I+ E+PKKWR++R++ GHGA Y
Sbjct: 1154 SGSWILKTDYVADSKEAGKLLQEEPYEWHSSGLSADGAINLESPKKWRLVREKTGHGALY 1213
Query: 1258 GMQIIVYGQLVSPSLDTVKRAVRSGDGTILATSPPYTRFLNSGVDFAVVSSAMPSADAWV 1317
G++I+VYG P LDT+KRAV++GDGTILAT+PPYTRFLN DFA++S MP D W+
Sbjct: 1214 GLRIVVYGDCTIPCLDTLKRAVKAGDGTILATAPPYTRFLNQNTDFALISPGMPRDDVWI 1273
Query: 1318 QQFISHDIPCITADYLVEYVCKHGHPLDRHVLFNTNDLANKSLKKL 1363
Q+FI H+IPC+ +DYLVEYVCK G+ LD+HVL+NTN A KS K+
Sbjct: 1274 QEFIRHEIPCVLSDYLVEYVCKPGYALDKHVLYNTNSWAEKSFNKM 1319
Score = 238 bits (607), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 114/206 (55%), Positives = 139/206 (67%), Gaps = 5/206 (2%)
Query: 16 FAGVRFFLVGFDPLSESQYRSEMVRRSGVDAGRFGSGCTHVIVCGLVYDDPACVAARAEG 75
++GV+F LVGF+P+ + RS++V GVD G+F CTH+IV L+YDDP CVAAR G
Sbjct: 12 YSGVKFALVGFNPIHGNSLRSKLVSGGGVDVGQFTQSCTHLIVDKLLYDDPICVAARNSG 71
Query: 76 KKVVTELWVEASLDRGMLADADRVMYWPVRDLNGIAGSESLRICLTGYQRSDREDIMSMV 135
K VVT WV+ S D GML +A+ ++Y P+RDLNGI GS++L +CLTGYQ DREDIM MV
Sbjct: 72 KVVVTGSWVDHSFDIGMLDNANSILYRPLRDLNGIPGSKALVVCLTGYQGHDREDIMRMV 131
Query: 136 SLMGAQFSKSLNPDVVTHLICYXXXXXXXXXXXXXXXXXXXXXXXVNHRWLEDCLKCWKI 195
LMG QFSK L + VTHLICY VNHRWLEDCLK WK+
Sbjct: 132 ELMGGQFSKPLVANRVTHLICY-----KFEGEKYELAKRIKRIKLVNHRWLEDCLKNWKL 186
Query: 196 LPVDDYSKSSWELEIMEAQAKDSEDE 221
LP DY S +EL+IMEA A+DSEDE
Sbjct: 187 LPEVDYEISGYELDIMEASARDSEDE 212
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.128 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 32,227,431
Number of extensions: 1406530
Number of successful extensions: 3684
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3694
Number of HSP's successfully gapped: 5
Length of query: 1462
Length of database: 11,106,569
Length adjustment: 111
Effective length of query: 1351
Effective length of database: 8,063,393
Effective search space: 10893643943
Effective search space used: 10893643943
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 118 (50.1 bits)