BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0304400 Os03g0304400|AK067385
(1462 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0304400 BRCT domain containing protein 2891 0.0
Os07g0689900 BRCT domain containing protein 783 0.0
>Os03g0304400 BRCT domain containing protein
Length = 1462
Score = 2891 bits (7495), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1408/1444 (97%), Positives = 1408/1444 (97%)
Query: 1 MASPISGSDDDDEHLFAGVRFFLVGFDPLSESQYRSEMVRRSGVDAGRFGSGCTHVIVCG 60
MASPISGSDDDDEHLFAGVRFFLVGFDPLSESQYRSEMVRRSGVDAGRFGSGCTHVIVCG
Sbjct: 1 MASPISGSDDDDEHLFAGVRFFLVGFDPLSESQYRSEMVRRSGVDAGRFGSGCTHVIVCG 60
Query: 61 LVYDDPACVAARAEGKKVVTELWVEASLDRGMLADADRVMYWPVRDLNGIAGSESLRICL 120
LVYDDPACVAARAEGKKVVTELWVEASLDRGMLADADRVMYWPVRDLNGIAGSESLRICL
Sbjct: 61 LVYDDPACVAARAEGKKVVTELWVEASLDRGMLADADRVMYWPVRDLNGIAGSESLRICL 120
Query: 121 TGYQRSDREDIMSMVSLMGAQFSKSLNPDVVTHLICYXXXXXXXXXXXXXXXXXXXXXXX 180
TGYQRSDREDIMSMVSLMGAQFSKSLNPDVVTHLICY
Sbjct: 121 TGYQRSDREDIMSMVSLMGAQFSKSLNPDVVTHLICYKFEGEKYEAAKKAKLKFNFNIKL 180
Query: 181 VNHRWLEDCLKCWKILPVDDYSKSSWELEIMEAQAKDSEDEEDVGQRSFRNKIVRSTLNP 240
VNHRWLEDCLKCWKILPVDDYSKSSWELEIMEAQAKDSEDEEDVGQRSFRNKIVRSTLNP
Sbjct: 181 VNHRWLEDCLKCWKILPVDDYSKSSWELEIMEAQAKDSEDEEDVGQRSFRNKIVRSTLNP 240
Query: 241 KGSAGTSANPVVNAPIRSPTISSGNIGMVLEKQPNIPGEIRKAEDAVNRIHDVAVQGTPR 300
KGSAGTSANPVVNAPIRSPTISSGNIGMVLEKQPNIPGEIRKAEDAVNRIHDVAVQGTPR
Sbjct: 241 KGSAGTSANPVVNAPIRSPTISSGNIGMVLEKQPNIPGEIRKAEDAVNRIHDVAVQGTPR 300
Query: 301 TRLAMSANTDFSTPSQIPFIHSDSRGDAAVRDLKNADQIQGNKHKDVGTKTLDVTSGASG 360
TRLAMSANTDFSTPSQIPFIHSDSRGDAAVRDLKNADQIQGNKHKDVGTKTLDVTSGASG
Sbjct: 301 TRLAMSANTDFSTPSQIPFIHSDSRGDAAVRDLKNADQIQGNKHKDVGTKTLDVTSGASG 360
Query: 361 TPCSSKMVVSANHNVHSLNKTNFVEDHGDTDASKADLTTPSREILPANVLDSSNVARGRS 420
TPCSSKMVVSANHNVHSLNKTNFVEDHGDTDASKADLTTPSREILPANVLDSSNVARGRS
Sbjct: 361 TPCSSKMVVSANHNVHSLNKTNFVEDHGDTDASKADLTTPSREILPANVLDSSNVARGRS 420
Query: 421 QEDYGATCTPDAAAGQSTINDNVTNNNIGLKSGNNASLNINNKSSLKPLEKSVLPEQYSA 480
QEDYGATCTPDAAAGQSTINDNVTNNNIGLKSGNNASLNINNKSSLKPLEKSVLPEQYSA
Sbjct: 421 QEDYGATCTPDAAAGQSTINDNVTNNNIGLKSGNNASLNINNKSSLKPLEKSVLPEQYSA 480
Query: 481 NRIGPLQGADGSMMRSDSSISTARKGDKIIADLAGVQVLKGGENIQDENVLDGAYSQKKK 540
NRIGPLQGADGSMMRSDSSISTARKGDKIIADLAGVQVLKGGENIQDENVLDGAYSQKKK
Sbjct: 481 NRIGPLQGADGSMMRSDSSISTARKGDKIIADLAGVQVLKGGENIQDENVLDGAYSQKKK 540
Query: 541 CSISPVLFKVQNGDTGKETGALNSPSANRLSDTSEPAIWSSVGTNPSEANNVDLXXXXXX 600
CSISPVLFKVQNGDTGKETGALNSPSANRLSDTSEPAIWSSVGTNPSEANNVDL
Sbjct: 541 CSISPVLFKVQNGDTGKETGALNSPSANRLSDTSEPAIWSSVGTNPSEANNVDLGKQQSG 600
Query: 601 XXXXXXXTALKHGNLVDGIKLPEYSSSETNAQPPPKPKELLATSLSATVHDVKRCPDFSF 660
TALKHGNLVDGIKLPEYSSSETNAQPPPKPKELLATSLSATVHDVKRCPDFSF
Sbjct: 601 SSKSRSRTALKHGNLVDGIKLPEYSSSETNAQPPPKPKELLATSLSATVHDVKRCPDFSF 660
Query: 661 QNKDGDYAQDSGNALNQDGSPLMRKTENVLAKVRTSDISLHSSRKSKLVPSSGNGDTEMS 720
QNKDGDYAQDSGNALNQDGSPLMRKTENVLAKVRTSDISLHSSRKSKLVPSSGNGDTEMS
Sbjct: 661 QNKDGDYAQDSGNALNQDGSPLMRKTENVLAKVRTSDISLHSSRKSKLVPSSGNGDTEMS 720
Query: 721 DALDIEKNKAAVASNCKPEKVVPDENIKADQLKDFPGTSNNVLRQTGYLKKVASRKGMKA 780
DALDIEKNKAAVASNCKPEKVVPDENIKADQLKDFPGTSNNVLRQTGYLKKVASRKGMKA
Sbjct: 721 DALDIEKNKAAVASNCKPEKVVPDENIKADQLKDFPGTSNNVLRQTGYLKKVASRKGMKA 780
Query: 781 STKRPRSASKVVDEPVVDDGKTKTVVSESEPDKMIAHKHIGETAKDGPDSVNAAEHRTNS 840
STKRPRSASKVVDEPVVDDGKTKTVVSESEPDKMIAHKHIGETAKDGPDSVNAAEHRTNS
Sbjct: 781 STKRPRSASKVVDEPVVDDGKTKTVVSESEPDKMIAHKHIGETAKDGPDSVNAAEHRTNS 840
Query: 841 SDKVLTDGASRISRRLQNVHTMKNDRHAASNLESSKMISEENTGIGITPKKFVSNATTEG 900
SDKVLTDGASRISRRLQNVHTMKNDRHAASNLESSKMISEENTGIGITPKKFVSNATTEG
Sbjct: 841 SDKVLTDGASRISRRLQNVHTMKNDRHAASNLESSKMISEENTGIGITPKKFVSNATTEG 900
Query: 901 HQTNSPKMLPNTSMRNTFAKRSRVSDTKMTGESSADKTETVAGKSLFDDLFPSQNIDHPK 960
HQTNSPKMLPNTSMRNTFAKRSRVSDTKMTGESSADKTETVAGKSLFDDLFPSQNIDHPK
Sbjct: 901 HQTNSPKMLPNTSMRNTFAKRSRVSDTKMTGESSADKTETVAGKSLFDDLFPSQNIDHPK 960
Query: 961 KLSSSASADGCGSLSCKNASPARVRNAVAKRKIKALEDKSDSKLGKIGGAIVSAAKAVAS 1020
KLSSSASADGCGSLSCKNASPARVRNAVAKRKIKALEDKSDSKLGKIGGAIVSAAKAVAS
Sbjct: 961 KLSSSASADGCGSLSCKNASPARVRNAVAKRKIKALEDKSDSKLGKIGGAIVSAAKAVAS 1020
Query: 1021 RGIEESSCNINKVSSDQNSVKTDGMRDVSGLFSSDTSVIDRSENLNNSKLRCSKRNKSLS 1080
RGIEESSCNINKVSSDQNSVKTDGMRDVSGLFSSDTSVIDRSENLNNSKLRCSKRNKSLS
Sbjct: 1021 RGIEESSCNINKVSSDQNSVKTDGMRDVSGLFSSDTSVIDRSENLNNSKLRCSKRNKSLS 1080
Query: 1081 LDHEKENMQDNGTLSSKSNGRTAIMNSNLDANSMKHGANMFNEPNRIKGNGPGTLITPEP 1140
LDHEKENMQDNGTLSSKSNGRTAIMNSNLDANSMKHGANMFNEPNRIKGNGPGTLITPEP
Sbjct: 1081 LDHEKENMQDNGTLSSKSNGRTAIMNSNLDANSMKHGANMFNEPNRIKGNGPGTLITPEP 1140
Query: 1141 TCFILSGHRQQRKDYRSILRCLKARVCRDSHHWSYQATHFIAPDPLKRTEKFFAAAAAGK 1200
TCFILSGHRQQRKDYRSILRCLKARVCRDSHHWSYQATHFIAPDPLKRTEKFFAAAAAGK
Sbjct: 1141 TCFILSGHRQQRKDYRSILRCLKARVCRDSHHWSYQATHFIAPDPLKRTEKFFAAAAAGK 1200
Query: 1201 WILKTDYLTSCNEVGKLLDEEPFEWSGTGLNDGETISFEAPKKWRVLRQQMGHGAFYGMQ 1260
WILKTDYLTSCNEVGKLLDEEPFEWSGTGLNDGETISFEAPKKWRVLRQQMGHGAFYGMQ
Sbjct: 1201 WILKTDYLTSCNEVGKLLDEEPFEWSGTGLNDGETISFEAPKKWRVLRQQMGHGAFYGMQ 1260
Query: 1261 IIVYGQLVSPSLDTVKRAVRSGDGTILATSPPYTRFLNSGVDFAVVSSAMPSADAWVQQF 1320
IIVYGQLVSPSLDTVKRAVRSGDGTILATSPPYTRFLNSGVDFAVVSSAMPSADAWVQQF
Sbjct: 1261 IIVYGQLVSPSLDTVKRAVRSGDGTILATSPPYTRFLNSGVDFAVVSSAMPSADAWVQQF 1320
Query: 1321 ISHDIPCITADYLVEYVCKHGHPLDRHVLFNTNDLANKSLKKLLQNQQEVATDVLKPQED 1380
ISHDIPCITADYLVEYVCKHGHPLDRHVLFNTNDLANKSLKKLLQNQQEVATDVLKPQED
Sbjct: 1321 ISHDIPCITADYLVEYVCKHGHPLDRHVLFNTNDLANKSLKKLLQNQQEVATDVLKPQED 1380
Query: 1381 GDPDDLSCSACGSTDRGEVMLICGNEDGSTGCGVGMHIDCCDPPLEAVPEHDWLCPQCEM 1440
GDPDDLSCSACGSTDRGEVMLICGNEDGSTGCGVGMHIDCCDPPLEAVPEHDWLCPQCEM
Sbjct: 1381 GDPDDLSCSACGSTDRGEVMLICGNEDGSTGCGVGMHIDCCDPPLEAVPEHDWLCPQCEM 1440
Query: 1441 PKAT 1444
PKAT
Sbjct: 1441 PKAT 1444
>Os07g0689900 BRCT domain containing protein
Length = 1335
Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/1395 (38%), Positives = 750/1395 (53%), Gaps = 128/1395 (9%)
Query: 7 GSDDDDEHLFAGVRFFLVGFDPLSESQYRSEMVRRSGVDAGRFGSGCTHVIVCGLVYDDP 66
G D D+ LFAGVRF L+GFDP+SESQYRSEMV+R GVDAG +G+GCTH+IVC L+YD+P
Sbjct: 6 GQDADNRRLFAGVRFALLGFDPVSESQYRSEMVQRGGVDAGAYGAGCTHLIVCDLLYDNP 65
Query: 67 ACVAARAEGKKVVTELWVEASLDRGMLADADRVMYWPVRDLNGIAGSESLRICLTGYQRS 126
CVAAR +G KVV+E WV+ SLD G +ADADRV+Y PVRD +GI GS+SLRICLTGYQ++
Sbjct: 66 ICVAARKDGTKVVSEQWVDDSLDLGEMADADRVLYRPVRDFSGIPGSQSLRICLTGYQKN 125
Query: 127 DREDIMSMVSLMGAQFSKSLNPDVVTHLICYXXXXXXXXXXXXXXXXXXXXXXXVNHRWL 186
R+DIM M SLMGA+FSKS + THLICY VNH+WL
Sbjct: 126 WRDDIMKMASLMGAEFSKSFDALKDTHLICYKFEGEKYKVAKRENTAKRANVSLVNHQWL 185
Query: 187 EDCLKCWKILPVDDYSKSSWELEIMEAQAKDSEDEEDVGQRS--FRNKIVRSTLNPKGSA 244
EDCL WKILP DDY+KS WE+EIM AQAKDSED+E+ RS + RS
Sbjct: 186 EDCLMAWKILPADDYTKSGWEIEIMAAQAKDSEDDEEEAGRSSSHSKRATRSARTKDIRM 245
Query: 245 GTSANPVVNAPIRSPTISSGNIGMVLEKQPNIPGEIRKAEDAVNRIHDVA--VQGTPRTR 302
T +P AP R PTISS + + + P I KA + +R ++ ++ TP
Sbjct: 246 ATLVDPHSQAPTRDPTISSCSAEITAGGHMSTPERITKAGGSTSRSLNIKSDIRNTP--- 302
Query: 303 LAMSANTDFSTPSQIPFIHSDSRGDAAVRDLKNADQIQGNKHKDVGTKTLDVTSGASGTP 362
+SA++D + P + + +A A Q+ + KD +D + GA
Sbjct: 303 --ISADSDAYESAHFPL---NGKEEAP------AAQVHRAEAKDDVKMAVDASPGAHCIS 351
Query: 363 CSSKMVVSANHNVHS--------LNKT-----NFVEDHGDTDASKADLTTPSREILPANV 409
+ V ++H+VH ++KT N ++ + + A +TPS+E
Sbjct: 352 NIAGTTVCSDHHVHQSTTAPAMLVDKTETIGGNCLDSSNQNNVNIALWSTPSKETFSEKT 411
Query: 410 LDSSNVARGRSQEDYGATCTPDAAAGQSTINDNVTNNNIGLKSGNNASLNINNK---SSL 466
L S ++ Q+D G+T + A QS +T L+ NA+ N++ +
Sbjct: 412 LRPSGISGNVGQKDGGSTPDLNTAVDQSNTARELTLCEANLRLTGNAASKKNSQVLSYNR 471
Query: 467 KPLEKSVLPEQYSANRIGPLQGADGSMMRSDSSISTARKGDKIIADLAGVQVLKGGENIQ 526
+ KSV PE + G Q +G R D +IS + K D I+D+ + L+ E ++
Sbjct: 472 RRCRKSVSPEA-NLKPTGSPQSFEGVTPRVDFTISPSMKSDHKISDITDAESLRDVEIVK 530
Query: 527 DENVLDGAYSQKKKCSISPVLFKVQNGDTGKETGALNSPSANRLSDTSEPAIWSSVGTNP 586
N GA +QK+ +S + K ETG NSP ++R S SE A +S N
Sbjct: 531 KVNKSSGALAQKRASKLSSISMKPS---VSSETGTANSPFSSRES-ASEAATFSDPSRNS 586
Query: 587 SEANNVDLXXXXXXXXXX--XXXTALKHGNLVDGIKLPEYSSSETNAQPPPKPKELLATS 644
+E+ + ALK V+G KL E S+ K L +
Sbjct: 587 AESVILTAKEKSGQSKSNLLSYRRALKLARPVEGEKLSENSTKSK--------KSLRENT 638
Query: 645 LSATVHDVKRCPDFSFQNKDGDYAQDSGNALNQDGSPLMRKTENVLAKVRTSDISLHSSR 704
L+ +H+V D + + + G A N + K R+S SL
Sbjct: 639 LA--LHEV----DKGGSSSENGLRSEKGCAANSSADSEVDK--------RSSSSSLQ--- 681
Query: 705 KSKLVPSSGNGDTEMSDALDIEKNKAAVASNCKPEKVVPDENIKADQLKDFPGTSNNVLR 764
N DTEMSD ++K + VA N VV +N++ + + +
Sbjct: 682 ---------NRDTEMSDVPQVDKTEV-VAPNTDFAIVVSHQNMEV--VPKSIQVTATISE 729
Query: 765 QTGYLKKVASRKGMKASTKRPRSASKVVDEPVVDDGKTKTVVSESEPDKMIAHKHIGETA 824
+ ++ + K AS KR +AS + T++V ++ D++++ K G+
Sbjct: 730 CETFPQEEPTSKVKNASVKRFGNAS--------NKAATRSVKNK---DEIVSFKSDGDKV 778
Query: 825 KDGPDSVNAAEHRTNSSDKVLTDGASRISRRLQNVHTMKNDRHAASNLESSKMISEENTG 884
+ P+ +A R N ++ + I + N +AA+N +S+ + NT
Sbjct: 779 EVQPEKNHA---RPNGAECTVF-----IPEEIPNSKA----NNAATN--NSRDALQMNTA 824
Query: 885 IGITPKKFVSNATTEGHQTNSPKMLPNTSMRNTFAKRSRVSDTKMTGESSADKTETVAGK 944
+ ++ TE + N + +++ K S+ +D +M D T + K
Sbjct: 825 LALS--------KTELAEKNPGSASADEYRKSSCEKVSQTADVEMPDAPIVDSTGAMFSK 876
Query: 945 SLFDDLFPSQNIDH-PKKLSSSASADGCGSLSCKNASPARVRNAVAKRKIKALEDKSDSK 1003
S F ++FP +N PK+LS++ + G + + RVR A AKRK+ A++ S
Sbjct: 877 SGFKEVFPPENAGSCPKRLSTNTNMGGPETCTPSIVPNNRVRKAAAKRKVSAVQQNSFGD 936
Query: 1004 LG-KIGGAIVSAAKAVASRGIEESSCNINKVSSDQN--SVKTDGMRDVSGLFSSDTSVID 1060
+ K A+VS K V R E N +K + DQN S DG RD FS D + D
Sbjct: 937 VPCKNSSAVVSEFKFVYKRA-SEGPRNGSKKTMDQNLQSSNEDGARDAGVSFSED-DMRD 994
Query: 1061 RSENLNNSKLRCSKRNKSLSL-----DHEKENMQDNGTLSSKSNGRTAI-MNSNLDANSM 1114
RS+ L NS+ R SKR K+ L DH+KEN+ N +S G + +NS + A
Sbjct: 995 RSKILQNSQARSSKRQKAADLMDGSTDHDKENLPGNHNISKSKYGNSCTSLNSFIQAAG- 1053
Query: 1115 KHGANMFNEPNRIKGNGPGTLITPEPTCFILSGHRQQRKDYRSILRCLKARVCRDSHHWS 1174
G + + ++ N G L EP FILSGHR RK+Y+ ILR LK RVCRDSH WS
Sbjct: 1054 -SGKDRLADRGVVEENDCGMLTVLEPRLFILSGHRLLRKEYKLILRRLKGRVCRDSHQWS 1112
Query: 1175 YQATHFIAPDPLKRTEKFFAAAAAGKWILKTDYLTSCNEVGKLLDEEPFEWSGTGLNDGE 1234
+QATHFI+P+ L+RTEKFFAAAAAG+WILK+DYLT+CNE GK L+EEPFEW G GLN+G+
Sbjct: 1113 FQATHFISPE-LRRTEKFFAAAAAGRWILKSDYLTACNEAGKFLEEEPFEWHGNGLNNGD 1171
Query: 1235 TISFEAPKKWRVLRQQMGHGAFYGMQIIVYGQLVSPSLDTVKRAVRSGDGTILATSPPYT 1294
TIS +AP+KWR LRQ GHGAFYGMQII+YG+ +SPSLDT+KRAVR+GDGTILATSPPYT
Sbjct: 1172 TISLDAPRKWRQLRQHTGHGAFYGMQIIIYGECISPSLDTLKRAVRAGDGTILATSPPYT 1231
Query: 1295 RFLNS--GVDFAVVSSAMPSADAWVQQFISHDIPCITADYLVEYVCKHGHPLDRHVLFNT 1352
RFL VDFAVVS+ PSADAWV++F IPCI+ADYLVEY+CK G L++HVLFN
Sbjct: 1232 RFLKKPDHVDFAVVSAGTPSADAWVEEFKRQGIPCISADYLVEYICKPGQSLNKHVLFNM 1291
Query: 1353 NDLANKSLKKLLQNQ 1367
+DLA+KS KLL+ Q
Sbjct: 1292 HDLADKSHAKLLKGQ 1306
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.128 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 50,502,973
Number of extensions: 2185454
Number of successful extensions: 4960
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 4942
Number of HSP's successfully gapped: 2
Length of query: 1462
Length of database: 17,035,801
Length adjustment: 113
Effective length of query: 1349
Effective length of database: 11,135,619
Effective search space: 15021950031
Effective search space used: 15021950031
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 163 (67.4 bits)