Os07g0689900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : BRCT domain containing protein.
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Os07g0689900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : BRCT domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65.34 | 0.38 | 9.12 | 0.111 | 0.608 | -1.47 | 0.287 | 2.89 | 0.26 | 0.583 | 26.03 | 277 | -- | -- |
| 67.27 | 0.382 | 9.16 | -0.187 | 0.66 | -1.21 | 0.173 | -- | 0.21 | 0.387 | 25.7 | 316 | -- | -- |
| 65.66 | 0.377 | 9.12 | 0.0846 | 0.606 | -1.47 | -- | 2.65 | 0.26 | 0.421 | 25.94 | 277 | -- | -- |
| 67.31 | 0.382 | 9.16 | -0.211 | 0.638 | -1.2 | -- | -- | 0.198 | 0.584 | 25.8 | 293 | -- | -- |
| 79.27 | 0.415 | 9.09 | 0.127 | -- | -1.65 | -- | 1.98 | 0.426 | -- | 24.13 | 74 | -- | -- |
| 90.65 | 0.446 | 9.16 | -0.384 | 0.965 | -- | 0.573 | -- | 0.146 | 2.64 | -- | -- | -- | -- |
| 91.79 | 0.449 | 9.16 | -0.398 | 0.965 | -- | -- | -- | 0.143 | 2.58 | -- | -- | -- | -- |
| 82.21 | 0.422 | 9.12 | -0.112 | -- | -1.55 | -- | -- | 0.332 | -- | 24.19 | 81 | -- | -- |
| 68.41 | 0.385 | 9.15 | -- | 0.626 | -1.25 | -- | -- | 0.227 | 0.413 | 25.7 | 292 | -- | -- |
| 146.37 | 0.565 | 9.15 | -0.357 | -- | -- | -- | -- | 0.167 | -- | -- | -- | -- | -- |
| 95.97 | 0.458 | 9.15 | -- | 0.957 | -- | -- | -- | 0.187 | 2.57 | -- | -- | -- | -- |
| 82.48 | 0.423 | 9.11 | -- | -- | -1.57 | -- | -- | 0.351 | -- | 24.1 | 73 | -- | -- |
| 149.73 | 0.571 | 9.15 | -- | -- | -- | -- | -- | 0.207 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.14 | temperature | 25 | 270 | > th | dose dependent | rect. | 2 | 18 |
| 17 | 65.28 | temperature | 25 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 46 | 65.72 | temperature | 25 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 53 | 65.81 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 57 | 65.83 | temperature | 25 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 69 | 65.89 | temperature | 25 | 270 | > th | dose dependent | sin | 22 | NA |
| 73 | 65.94 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 110 | 66.49 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 192 | 67.36 | temperature | 25 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 270 | 67.97 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 292 | 68.17 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 316 | 68.32 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 23 |
| 332 | 68.38 | temperature | 10 | 270 | > th | dose dependent | sin | 22 | NA |
| 527 | 69.19 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 13 |
| 531 | 69.20 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 546 | 69.29 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 16 |
| 593 | 69.51 | temperature | 10 | 720 | > th | dose dependent | sin | 3 | NA |
| 638 | 69.72 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 653 | 69.76 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 19 |
| 683 | 69.87 | temperature | 30 | 720 | > th | dose independent | rect. | 15 | 1 |
| 707 | 69.96 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 715 | 69.98 | temperature | 30 | 270 | < th | dose independent | sin | 23 | NA |
| 738 | 70.06 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 749 | 70.11 | temperature | 30 | 270 | > th | dose independent | sin | 21 | NA |
| 756 | 70.14 | temperature | 30 | 270 | > th | dose independent | rect. | 11 | 23 |
| 759 | 70.15 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 8 |
| 802 | 70.30 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 11 |
| 824 | 70.38 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |
| 825 | 70.38 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 11 |
| 920 | 70.39 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 921 | 70.39 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 8 |
| 941 | 70.40 | temperature | 30 | 270 | > th | dose independent | rect. | 10 | 9 |
| 990 | 70.45 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 20 |