BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0689900 Os07g0689900|Os07g0689900
(1335 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G02110.1 | chr4:935191-940191 FORWARD LENGTH=1330 337 2e-92
AT1G77320.1 | chr1:29056740-29062710 FORWARD LENGTH=973 56 1e-07
AT1G67180.1 | chr1:25130099-25132169 FORWARD LENGTH=454 54 6e-07
>AT4G02110.1 | chr4:935191-940191 FORWARD LENGTH=1330
Length = 1329
Score = 337 bits (864), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 144/244 (59%), Positives = 190/244 (77%), Gaps = 8/244 (3%)
Query: 1059 LADRGVVEENDCGMLTVLEPRLFILSGHRLLRKEYKLILRRLKGRVCRDSHQWSFQATHF 1118
LA R V ++ + EP+ FI+SG R R EY+ I+RRLKG+ CRDSHQWS+QATHF
Sbjct: 1084 LASRKVFQDQEH------EPKFFIVSGPRSQRNEYQQIIRRLKGKCCRDSHQWSYQATHF 1137
Query: 1119 ISPELRRTEKFFAAAAAGRWILKSDYLTACNEAGKFLEEEPFEWHGNGLNNGDTISLDAP 1178
I+PE+RRTEKFFAAAA+G WILK+DY+ EAGK L+EEP+EWH +GL+ I+L++P
Sbjct: 1138 IAPEIRRTEKFFAAAASGSWILKTDYVADSKEAGKLLQEEPYEWHSSGLSADGAINLESP 1197
Query: 1179 RKWRQLRQHTGHGAFYGMQIIIYGECISPSLDTLKRAVRAGDGTILATSPPYTRFLKKPD 1238
+KWR +R+ TGHGA YG++I++YG+C P LDTLKRAV+AGDGTILAT+PPYTRFL +
Sbjct: 1198 KKWRLVREKTGHGALYGLRIVVYGDCTIPCLDTLKRAVKAGDGTILATAPPYTRFLNQ-- 1255
Query: 1239 HVDFAVVSAGTPSADAWVEEFKRQGIPCISADYLVEYICKPGQSLNKHVLFNMHDLADKS 1298
+ DFA++S G P D W++EF R IPC+ +DYLVEY+CKPG +L+KHVL+N + A+KS
Sbjct: 1256 NTDFALISPGMPRDDVWIQEFIRHEIPCVLSDYLVEYVCKPGYALDKHVLYNTNSWAEKS 1315
Query: 1299 HAKL 1302
K+
Sbjct: 1316 FNKM 1319
Score = 267 bits (683), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 120/212 (56%), Positives = 159/212 (75%), Gaps = 5/212 (2%)
Query: 13 RLFAGVRFALLGFDPVSESQYRSEMVQRGGVDAGAYGAGCTHLIVCDLLYDNPICVAARK 72
+ ++GV+FAL+GF+P+ + RS++V GGVD G + CTHLIV LLYD+PICVAAR
Sbjct: 10 KTYSGVKFALVGFNPIHGNSLRSKLVSGGGVDVGQFTQSCTHLIVDKLLYDDPICVAARN 69
Query: 73 DGTKVVSEQWVDDSLDLGEMADADRVLYRPVRDFSGIPGSQSLRICLTGYQKNWRDDIMK 132
G VV+ WVD S D+G + +A+ +LYRP+RD +GIPGS++L +CLTGYQ + R+DIM+
Sbjct: 70 SGKVVVTGSWVDHSFDIGMLDNANSILYRPLRDLNGIPGSKALVVCLTGYQGHDREDIMR 129
Query: 133 MASLMGAEFSKSFDALKDTHLICYKFEGEKYKVAKRENTAKRANVSLVNHQWLEDCLMAW 192
M LMG +FSK A + THLICYKFEGEKY++AKR KR + LVNH+WLEDCL W
Sbjct: 130 MVELMGGQFSKPLVANRVTHLICYKFEGEKYELAKR---IKR--IKLVNHRWLEDCLKNW 184
Query: 193 KILPADDYTKSGWEIEIMAAQAKDSEDDEEEA 224
K+LP DY SG+E++IM A A+DSED+ E+A
Sbjct: 185 KLLPEVDYEISGYELDIMEASARDSEDEAEDA 216
>AT1G77320.1 | chr1:29056740-29062710 FORWARD LENGTH=973
Length = 972
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 66/127 (51%), Gaps = 8/127 (6%)
Query: 75 TKVVSEQWVDDSLDLG-EMADADRVLYRPVRDFSGIPGSQSLRICLTGYQKNWRDDIMKM 133
T VS WV + L +G +A + +LY P+ + +PG +SL IC + + + + + +
Sbjct: 626 TIYVSSHWVRNCLKVGCLLAVSSHILYSPLPCQTPLPGFESLCICSSQHNEKNVELLRNL 685
Query: 134 ASLMGAEFSKSFDALKDTHLICYKFEGEKYKVAKRENTAKRANVSLVNHQWLEDCLMAWK 193
+ ++GA+F + K THLIC +G+KY A + + V WL +C+ +
Sbjct: 686 SVVLGADFVERL-TRKVTHLICNFAKGDKYV------RASKWGIISVTPDWLYECVRQNQ 738
Query: 194 ILPADDY 200
++ D++
Sbjct: 739 VVCTDNF 745
>AT1G67180.1 | chr1:25130099-25132169 FORWARD LENGTH=454
Length = 453
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 7/71 (9%)
Query: 119 LTGYQKNWRDDIMKMASLMGAEFSKSFDALKDTHLICYKFEGEKYKVAKRENTAKRANVS 178
++GY + R ++K+ S GA + + + THL+C+KFEG+KY +AK+ T
Sbjct: 8 VSGYHGSDRFKLIKLISHSGASYVGAM-SRSITHLVCWKFEGKKYDLAKKFGTV------ 60
Query: 179 LVNHQWLEDCL 189
+VNH+W+E+C+
Sbjct: 61 VVNHRWVEECV 71
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.127 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 28,680,238
Number of extensions: 1218402
Number of successful extensions: 3173
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3171
Number of HSP's successfully gapped: 4
Length of query: 1335
Length of database: 11,106,569
Length adjustment: 111
Effective length of query: 1224
Effective length of database: 8,063,393
Effective search space: 9869593032
Effective search space used: 9869593032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 118 (50.1 bits)