BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0689800 Os07g0689800|AK071235
(603 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0689800 Heat shock protein DnaJ, N-terminal domain con... 760 0.0
Os03g0304500 Heat shock protein DnaJ, N-terminal domain con... 374 e-103
Os04g0483700 Conserved hypothetical protein 102 8e-22
>Os07g0689800 Heat shock protein DnaJ, N-terminal domain containing protein
Length = 603
Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/603 (67%), Positives = 407/603 (67%)
Query: 1 MAVSSPDRRRNWLRGHRKQIIGDYXXXXXXXXXXXXXXXXXXXXXXHSAATAALGLVEAV 60
MAVSSPDRRRNWLRGHRKQIIGDY HSAATAALGLVEAV
Sbjct: 1 MAVSSPDRRRNWLRGHRKQIIGDYLAEARAALAAAAAAPLDGEGGEHSAATAALGLVEAV 60
Query: 61 LEMSPRMEXXXXXXXXXXXXXXXXXXVADMLRDYIPSCTKPXXXXXXXXXXXXXXXXXXX 120
LEMSPRME VADMLRDYIPSCTKP
Sbjct: 61 LEMSPRMEAALELRARSLLALRRYRAVADMLRDYIPSCTKPCSADDTSSSSSSSSSCSSA 120
Query: 121 XXXXXXXPXXXXXXXXXXXXXFLCCFDISDLKHRVLAGFSKNTSADTQWRYLVLGQACFH 180
P FLCCFDISDLKHRVLAGFSKNTSADTQWRYLVLGQACFH
Sbjct: 121 SRTDLLSPARDRSDAASAASRFLCCFDISDLKHRVLAGFSKNTSADTQWRYLVLGQACFH 180
Query: 181 LGLMEDAAALLQTGRRLASAAFRRESVCWSEDSFSPSNLTXXXXXXXXXXXXXXXXXXXX 240
LGLMEDAAALLQTGRRLASAAFRRESVCWSEDSFSPSNLT
Sbjct: 181 LGLMEDAAALLQTGRRLASAAFRRESVCWSEDSFSPSNLTANAISAPASRRASKSGAAGS 240
Query: 241 XXXXXXQXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHFSKVLDARRGVLPHPFATACLVG 300
Q RHFSKVLDARRGVLPHPFATACLVG
Sbjct: 241 EAESVSQLLAHVKLLLRRRAAAVAALDADLPAEAVRHFSKVLDARRGVLPHPFATACLVG 300
Query: 301 RAEALRSSGRAADAIADCNRALALDPAFIPALRSRADLLESVGALSDCLRDLEHLKLLYD 360
RAEALRSSGRAADAIADCNRALALDPAFIPALRSRADLLESVGALSDCLRDLEHLKLLYD
Sbjct: 301 RAEALRSSGRAADAIADCNRALALDPAFIPALRSRADLLESVGALSDCLRDLEHLKLLYD 360
Query: 361 AALRDGKLPGPTWRPQGGVRFSEIAGAHRALTPRIQQLRGRVAGGEACSVDYYALLGVRR 420
AALRDGKLPGPTWRPQGGVRFSEIAGAHRALTPRIQQLRGRVAGGEACSVDYYALLGVRR
Sbjct: 361 AALRDGKLPGPTWRPQGGVRFSEIAGAHRALTPRIQQLRGRVAGGEACSVDYYALLGVRR 420
Query: 421 GCTRSELERAHLLLTLKLRPDRCASFAERLELVDEHRDLEAVRDQARMSALSLYRMLQKG 480
GCTRSELERAHLLLTLKLRPDRCASFAERLELVDEHRDLEAVRDQARMSALSLYRMLQKG
Sbjct: 421 GCTRSELERAHLLLTLKLRPDRCASFAERLELVDEHRDLEAVRDQARMSALSLYRMLQKG 480
Query: 481 YSFIMSVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPEKARISSVSVP 540
YSFIMSVV VPEKARISSVSVP
Sbjct: 481 YSFIMSVVQDEEAAERQRAKDAAAATAAAAAAAAAAALAREQEETAAVPEKARISSVSVP 540
Query: 541 SXXXXXXXXXXXXXXXXXXXXXXXXGSPVFQGVFCRDMAVVGTLLSRGGFDRPIPVKCEA 600
S GSPVFQGVFCRDMAVVGTLLSRGGFDRPIPVKCEA
Sbjct: 541 STNVQVQVTQAAAMPTAAMAAAAAMGSPVFQGVFCRDMAVVGTLLSRGGFDRPIPVKCEA 600
Query: 601 MSC 603
MSC
Sbjct: 601 MSC 603
>Os03g0304500 Heat shock protein DnaJ, N-terminal domain containing protein
Length = 668
Score = 374 bits (960), Expect = e-103, Method: Compositional matrix adjust.
Identities = 182/213 (85%), Positives = 195/213 (91%)
Query: 276 RHFSKVLDARRGVLPHPFATACLVGRAEALRSSGRAADAIADCNRALALDPAFIPALRSR 335
RHFSK+L+ARRGVLPHPFA ACLVGRA A ++ GR ADAIADCNRALALDPA+IPALR+R
Sbjct: 286 RHFSKILEARRGVLPHPFAAACLVGRAAAFQAGGRPADAIADCNRALALDPAYIPALRAR 345
Query: 336 ADLLESVGALSDCLRDLEHLKLLYDAALRDGKLPGPTWRPQGGVRFSEIAGAHRALTPRI 395
ADLL+SVGAL+DCLRDL+HLKLLYDAALRDGKLPGP WRPQGGVR+ EIAGAHR LT RI
Sbjct: 346 ADLLQSVGALADCLRDLDHLKLLYDAALRDGKLPGPRWRPQGGVRYREIAGAHRKLTARI 405
Query: 396 QQLRGRVAGGEACSVDYYALLGVRRGCTRSELERAHLLLTLKLRPDRCASFAERLELVDE 455
Q LR RVA GEAC++DYYALLGVRRGCTRSELERAHLLLTLKL+PDR F ERLELVDE
Sbjct: 406 QGLRSRVAAGEACNIDYYALLGVRRGCTRSELERAHLLLTLKLKPDRAVVFGERLELVDE 465
Query: 456 HRDLEAVRDQARMSALSLYRMLQKGYSFIMSVV 488
HRDLEAVRDQARMSAL LYRMLQKGYSFIMS V
Sbjct: 466 HRDLEAVRDQARMSALLLYRMLQKGYSFIMSAV 498
Score = 115 bits (289), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 54/64 (84%), Positives = 57/64 (89%)
Query: 145 CFDISDLKHRVLAGFSKNTSADTQWRYLVLGQACFHLGLMEDAAALLQTGRRLASAAFRR 204
CFDIS+LK RVLA SKN + DTQWRYLVLGQACFHLGL+EDA LLQTGRRLASAAFRR
Sbjct: 152 CFDISELKRRVLASLSKNPNTDTQWRYLVLGQACFHLGLIEDAMVLLQTGRRLASAAFRR 211
Query: 205 ESVC 208
ESVC
Sbjct: 212 ESVC 215
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 34/36 (94%), Gaps = 1/36 (2%)
Query: 569 VFQGVFCRDMAVVGTLLSRGGF-DRPIPVKCEAMSC 603
V+QGVFCRDMAVVGTLLSRGGF DR +PVKCEAMSC
Sbjct: 633 VYQGVFCRDMAVVGTLLSRGGFVDRAMPVKCEAMSC 668
>Os04g0483700 Conserved hypothetical protein
Length = 215
Score = 102 bits (254), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 69/151 (45%), Gaps = 40/151 (26%)
Query: 7 DRRRNWLRGHRKQIIGDYXXXXXXXXXXXXXXXXXXXXXXHSAATAALGLVEAVLEMSPR 66
D+RR WLRGHRKQIIGDY HSAAT ALGLVEAVLE+SPR
Sbjct: 43 DKRRIWLRGHRKQIIGDY--LIEARAAFAAAAPLNGECGDHSAATTALGLVEAVLELSPR 100
Query: 67 MEXXXXXXXXXXXXXXXXXXVADMLRDYIPSCTKPXXXXXXXXXXXXXXXXXXXXXXXXX 126
ME VADMLRDYIPSCTKP
Sbjct: 101 MEAALELRACSLLAFRRYRGVADMLRDYIPSCTKP------------------------- 135
Query: 127 XPXXXXXXXXXXXXXFLCCFDISDLKHRVLA 157
FLCCFDIS+LKHRVLA
Sbjct: 136 -------------TCFLCCFDISNLKHRVLA 153
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.136 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,618,682
Number of extensions: 448511
Number of successful extensions: 1549
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1541
Number of HSP's successfully gapped: 8
Length of query: 603
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 496
Effective length of database: 11,448,903
Effective search space: 5678655888
Effective search space used: 5678655888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 159 (65.9 bits)