BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0675000 Os07g0675000|AK073523
         (831 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0675000  Acyl-CoA dehydrogenase, type1/2, C-terminal do...  1667   0.0  
AK071923                                                           98   3e-20
Os05g0125500  Similar to Isovaleryl-CoA dehydrogenase, mitoc...    97   4e-20

>Os07g0675000 Acyl-CoA dehydrogenase, type1/2, C-terminal domain containing
           protein
          Length = 831

 Score = 1667 bits (4318), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 804/831 (96%), Positives = 804/831 (96%)

Query: 1   MLTSGLLRPVDDAHAIDEAALLRYAAEHVAGFPSPARGLALTQFGHGQSNPTYCIEASAP 60
           MLTSGLLRPVDDAHAIDEAALLRYAAEHVAGFPSPARGLALTQFGHGQSNPTYCIEASAP
Sbjct: 1   MLTSGLLRPVDDAHAIDEAALLRYAAEHVAGFPSPARGLALTQFGHGQSNPTYCIEASAP 60

Query: 61  GGVTARYVLRKKPPGAILQSAHAVEREFQVLKALGTYTDVPVPKVFCLCTDASVIGTPFY 120
           GGVTARYVLRKKPPGAILQSAHAVEREFQVLKALGTYTDVPVPKVFCLCTDASVIGTPFY
Sbjct: 61  GGVTARYVLRKKPPGAILQSAHAVEREFQVLKALGTYTDVPVPKVFCLCTDASVIGTPFY 120

Query: 121 IMEHLEGLIYPDNKLTGVTPTKRKTIYLAAAETLAAIHKVDVTAIGLQKYGRRDNYCKRQ 180
           IMEHLEGLIYPDNKLTGVTPTKRKTIYLAAAETLAAIHKVDVTAIGLQKYGRRDNYCKRQ
Sbjct: 121 IMEHLEGLIYPDNKLTGVTPTKRKTIYLAAAETLAAIHKVDVTAIGLQKYGRRDNYCKRQ 180

Query: 181 VERWGRQYLSSTGEGKPARYQKMLDLAHWLKEHIPKEDSSAGFGTGLVHGDYRVDNLVFH 240
           VERWGRQYLSSTGEGKPARYQKMLDLAHWLKEHIPKEDSSAGFGTGLVHGDYRVDNLVFH
Sbjct: 181 VERWGRQYLSSTGEGKPARYQKMLDLAHWLKEHIPKEDSSAGFGTGLVHGDYRVDNLVFH 240

Query: 241 PTEDRVIGVLDWELSTLGNQMCDVAYSSLPYIIDATTSTGYSYGGFEYTGIPDGIPPLEE 300
           PTEDRVIGVLDWELSTLGNQMCDVAYSSLPYIIDATTSTGYSYGGFEYTGIPDGIPPLEE
Sbjct: 241 PTEDRVIGVLDWELSTLGNQMCDVAYSSLPYIIDATTSTGYSYGGFEYTGIPDGIPPLEE 300

Query: 301 YLAAYCSISARPWPAASWKFYVAFSLFRGASIYAGVYHRWTMGNASGGERARFSGKIANA 360
           YLAAYCSISARPWPAASWKFYVAFSLFRGASIYAGVYHRWTMGNASGGERARFSGKIANA
Sbjct: 301 YLAAYCSISARPWPAASWKFYVAFSLFRGASIYAGVYHRWTMGNASGGERARFSGKIANA 360

Query: 361 MVDRAWDIINRENVLREQPARGMHASNGPSQEFQRKHEGSISTKDQGKFVPSEKVMQLRN 420
           MVDRAWDIINRENVLREQPARGMHASNGPSQEFQRKHEGSISTKDQGKFVPSEKVMQLRN
Sbjct: 361 MVDRAWDIINRENVLREQPARGMHASNGPSQEFQRKHEGSISTKDQGKFVPSEKVMQLRN 420

Query: 421 KLMKFMEDYIYPMESEFYKRAHSTSRWTIHPXXXXXXXXXXREGLWNLFIPLDSAARARE 480
           KLMKFMEDYIYPMESEFYKRAHSTSRWTIHP          REGLWNLFIPLDSAARARE
Sbjct: 421 KLMKFMEDYIYPMESEFYKRAHSTSRWTIHPEEEKLKALAKREGLWNLFIPLDSAARARE 480

Query: 481 LLFEDMXXXXXXXXXXXXXXXXXTNLEYGYLCEIMGRSIWAPQIFNCGPPDTGNMEVLLR 540
           LLFEDM                 TNLEYGYLCEIMGRSIWAPQIFNCGPPDTGNMEVLLR
Sbjct: 481 LLFEDMSHGSPGSSEELLLGAGLTNLEYGYLCEIMGRSIWAPQIFNCGPPDTGNMEVLLR 540

Query: 541 YGTKEQQKQWLVPLLEGKIRSGFAMTEPQVASSDATNIECSISRQGDFYVINGTKWWTSG 600
           YGTKEQQKQWLVPLLEGKIRSGFAMTEPQVASSDATNIECSISRQGDFYVINGTKWWTSG
Sbjct: 541 YGTKEQQKQWLVPLLEGKIRSGFAMTEPQVASSDATNIECSISRQGDFYVINGTKWWTSG 600

Query: 601 AMDPRCQILVLMGKTDFSAPKHKQQSMILVDVKTPGVQIRRPLLVFGFDDAPHGHAEITF 660
           AMDPRCQILVLMGKTDFSAPKHKQQSMILVDVKTPGVQIRRPLLVFGFDDAPHGHAEITF
Sbjct: 601 AMDPRCQILVLMGKTDFSAPKHKQQSMILVDVKTPGVQIRRPLLVFGFDDAPHGHAEITF 660

Query: 661 ENVRVPATNILLGEGRGFEIAQGRLGPGRLHHCMRLIGAAERGMNLMVERALSRTTFGKK 720
           ENVRVPATNILLGEGRGFEIAQGRLGPGRLHHCMRLIGAAERGMNLMVERALSRTTFGKK
Sbjct: 661 ENVRVPATNILLGEGRGFEIAQGRLGPGRLHHCMRLIGAAERGMNLMVERALSRTTFGKK 720

Query: 721 IAQHGSFLADLAKCRVELEQARLLVLEAADQLDRHGNKKARGILAMAKVAAPNMALKVLD 780
           IAQHGSFLADLAKCRVELEQARLLVLEAADQLDRHGNKKARGILAMAKVAAPNMALKVLD
Sbjct: 721 IAQHGSFLADLAKCRVELEQARLLVLEAADQLDRHGNKKARGILAMAKVAAPNMALKVLD 780

Query: 781 MAMQVHGGAGLSSDTVLSHLWATARTLRIADGPDEVHLGTIAKLELQRARM 831
           MAMQVHGGAGLSSDTVLSHLWATARTLRIADGPDEVHLGTIAKLELQRARM
Sbjct: 781 MAMQVHGGAGLSSDTVLSHLWATARTLRIADGPDEVHLGTIAKLELQRARM 831



>AK071923 
          Length = 358

 Score = 98.2 bits (243), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 125/288 (43%), Gaps = 12/288 (4%)

Query: 538 LLRYGTKEQQKQWLVPLLEGKIRSGFAMTEPQVASSDATNIECSISRQGDFYVINGTKWW 597
           L+R+G+  Q+ ++L  L+ G+     AM+EP  + SD  +++C   +    YVING K W
Sbjct: 75  LVRHGSPAQKLKYLPKLISGEHVGALAMSEPN-SGSDVVSMKCKAEKVDGGYVINGNKMW 133

Query: 598 TSGAMDPRCQILVLMGKTDFSAPKHKQQSMILVDVKTPGVQIRRPLLVFGFDDAPHGHAE 657
            +    P  Q LV+  KTD +A   K  +  +++   PG    + L   G   +     E
Sbjct: 134 CTNG--PSAQTLVVYAKTDIAAGS-KGITAFIIEKGMPGFSTAQKLDKLGMRGSDT--CE 188

Query: 658 ITFENVRVPATNILLGEGRGFEIAQGRLGPGRLHHCMRLIGAAERGMNLMVERALSRTTF 717
           + FEN  VP  N+L  EG+G  +    L   RL      IG  +  +++ V     R  F
Sbjct: 189 LVFENCFVPHENVLGEEGKGVYVMMSGLDLERLVLAAGPIGLMQACLDVAVPYVRQREQF 248

Query: 718 GKKIAQHGSFLADLAKCRVELEQARLLVLEAADQLD--RHGNKKARGILAMAKVAAPNMA 775
           G+ I +       LA     L+ +R  V   A   D  +   K   G++  A   A  +A
Sbjct: 249 GRPIGEFQFIQGKLADMYTSLQSSRSFVYSVARDCDNGKVDRKDCAGVILFAAERATQVA 308

Query: 776 LKVLDMAMQVHGGAGLSSDTVLSHLWATARTLRIADGPDEVHLGTIAK 823
           L+    A+Q  GG G  ++     L   A+   I  G  E+    I +
Sbjct: 309 LQ----AIQCLGGNGYINEYPTGRLLRDAKLFEIGAGTSEIRRMIIGR 352



>Os05g0125500 Similar to Isovaleryl-CoA dehydrogenase, mitochondrial precursor
           (EC 1.3.99.10) (IVD)
          Length = 409

 Score = 97.4 bits (241), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 125/288 (43%), Gaps = 12/288 (4%)

Query: 538 LLRYGTKEQQKQWLVPLLEGKIRSGFAMTEPQVASSDATNIECSISRQGDFYVINGTKWW 597
           L+R+G+  Q+ ++L  L+ G+     AM+EP  + SD  +++C   +    YVING K W
Sbjct: 126 LVRHGSPAQKLKYLPKLISGEHVGALAMSEPN-SGSDVVSMKCKAEKVDGGYVINGNKMW 184

Query: 598 TSGAMDPRCQILVLMGKTDFSAPKHKQQSMILVDVKTPGVQIRRPLLVFGFDDAPHGHAE 657
            +    P  Q LV+  KTD +A   K  +  +++   PG    + L   G   +     E
Sbjct: 185 CTNG--PSAQTLVVYAKTDIAAGS-KGITAFIIEKGMPGFSTAQKLDKLGMRGSDT--CE 239

Query: 658 ITFENVRVPATNILLGEGRGFEIAQGRLGPGRLHHCMRLIGAAERGMNLMVERALSRTTF 717
           + FEN  VP  N+L  EG+G  +    L   RL      IG  +  +++ V     R  F
Sbjct: 240 LVFENCFVPHENVLGEEGKGVYVMMSGLDLERLVLAAGPIGLMQACLDVAVPYVRQREQF 299

Query: 718 GKKIAQHGSFLADLAKCRVELEQARLLVLEAADQLD--RHGNKKARGILAMAKVAAPNMA 775
           G+ I +       LA     L+ +R  V   A   D  +   K   G++  A   A  +A
Sbjct: 300 GRPIGEFQFIQGKLADMYTSLQSSRSFVYSVARDCDNGKVDRKDCAGVILFAAERATQVA 359

Query: 776 LKVLDMAMQVHGGAGLSSDTVLSHLWATARTLRIADGPDEVHLGTIAK 823
           L+    A+Q  GG G  ++     L   A+   I  G  E+    I +
Sbjct: 360 LQ----AIQCLGGNGYINEYPTGRLLRDAKLFEIGAGTSEIRRMIIGR 403



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 29,580,885
Number of extensions: 1314512
Number of successful extensions: 2711
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2706
Number of HSP's successfully gapped: 3
Length of query: 831
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 722
Effective length of database: 11,344,475
Effective search space: 8190710950
Effective search space used: 8190710950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 160 (66.2 bits)