BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0674500 Os07g0674500|AK107802
         (145 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0674500  Conserved hypothetical protein                      211   1e-55
Os07g0674400  Conserved hypothetical protein                       75   1e-14

>Os07g0674500 Conserved hypothetical protein
          Length = 145

 Score =  211 bits (537), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 115/145 (79%), Positives = 115/145 (79%)

Query: 1   MASKILLVVIGXXXXXXXXXXXXXXQPPRIQADVVVMGYVPCNNGTSMKSGSAPGFPNAV 60
           MASKILLVVIG              QPPRIQADVVVMGYVPCNNGTSMKSGSAPGFPNAV
Sbjct: 1   MASKILLVVIGVAVVSVVASAAPPAQPPRIQADVVVMGYVPCNNGTSMKSGSAPGFPNAV 60

Query: 61  VQLQCXXXXXXXXXXXXXXXXGKGWFRMAMNTTAALSSVASGCSLVVTTPLATCDAALPA 120
           VQLQC                GKGWFRMAMNTTAALSSVASGCSLVVTTPLATCDAALPA
Sbjct: 61  VQLQCAGDAVAAVAAGSATTDGKGWFRMAMNTTAALSSVASGCSLVVTTPLATCDAALPA 120

Query: 121 TGTLQSGLRLLVSMVFFPRGFSYVV 145
           TGTLQSGLRLLVSMVFFPRGFSYVV
Sbjct: 121 TGTLQSGLRLLVSMVFFPRGFSYVV 145



>Os07g0674400 Conserved hypothetical protein
          Length = 140

 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 61/116 (52%), Gaps = 11/116 (9%)

Query: 34  VVVMGYVPCNNGTSMKSGSAPGFPNAVVQLQCXXXXXXXXXXXXXXXXGKGWFRMAMNTT 93
           +VV G VPCN G+ +   ++P FPNA V+L+C                  G F M  + T
Sbjct: 27  LVVTGVVPCNTGSLIDIATSPAFPNADVELRCAGKLVAGATTNS-----NGSFAMEADLT 81

Query: 94  AALSSVASGCSLVVTTPLATCDAALPATGT----LQSGLRLLVSMVF--FPRGFSY 143
           + L+ +  GC LVV TPL  CDA LPA G+    LQ  L  L+  +F  FP GFS+
Sbjct: 82  SGLAMLIGGCKLVVDTPLIKCDANLPAAGSLVSYLQGPLTRLLGGIFRLFPAGFSF 137



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.134    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,632,987
Number of extensions: 103364
Number of successful extensions: 219
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 4
Length of query: 145
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 54
Effective length of database: 12,284,327
Effective search space: 663353658
Effective search space used: 663353658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 151 (62.8 bits)