BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0668800 Os07g0668800|AK103292
         (439 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0668800  Conserved hypothetical protein                      863   0.0  
Os06g0129200  Conserved hypothetical protein                      250   2e-66
Os07g0123500  Thioredoxin-related domain containing protein        75   8e-14

>Os07g0668800 Conserved hypothetical protein
          Length = 439

 Score =  863 bits (2230), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/439 (97%), Positives = 427/439 (97%)

Query: 1   MSGVRRAAGRPKIGDLATSDVVVRLRTPEGRDEWLYCHSGVLAAGSRYFADRLSDDWPTC 60
           MSGVRRAAGRPKIGDLATSDVVVRLRTPEGRDEWLYCHSGVLAAGSRYFADRLSDDWPTC
Sbjct: 1   MSGVRRAAGRPKIGDLATSDVVVRLRTPEGRDEWLYCHSGVLAAGSRYFADRLSDDWPTC 60

Query: 61  QILGSRYCVEVHCQELDLSPHVTALRLLYAAEPCSRFGVRGALGVLQAAAHLACPRVAAA 120
           QILGSRYCVEVHCQELDLSPHVTALRLLYAAEPCSRFGVRGALGVLQAAAHLACPRVAAA
Sbjct: 61  QILGSRYCVEVHCQELDLSPHVTALRLLYAAEPCSRFGVRGALGVLQAAAHLACPRVAAA 120

Query: 121 CVDYLESAPWDEADEEEILRTIPCLGPQYECVLARLRPIDPAPVAGILLSAFRHATSTRS 180
           CVDYLESAPWDEADEEEILRTIPCLGPQYECVLARLRPIDPAPVAGILLSAFRHATSTRS
Sbjct: 121 CVDYLESAPWDEADEEEILRTIPCLGPQYECVLARLRPIDPAPVAGILLSAFRHATSTRS 180

Query: 181 PPQELKSAAQEQLEYMLTEXXXXXXXXXXXXIVRSQVKDCVAALLSRFSGFTSSILMEQG 240
           PPQELKSAAQEQLEYMLTE            IVRSQVKDCVAALLSRFSGFTSSILMEQG
Sbjct: 181 PPQELKSAAQEQLEYMLTEDDDAPLLAFDDDIVRSQVKDCVAALLSRFSGFTSSILMEQG 240

Query: 241 EAPLGHGDAEVQQELHSLVSDISWVCQILSKLEMMKCVVVYWIGVSSDVVEAVDKACGGI 300
           EAPLGHGDAEVQQELHSLVSDISWVCQILSKLEMMKCVVVYWIGVSSDVVEAVDKACGGI
Sbjct: 241 EAPLGHGDAEVQQELHSLVSDISWVCQILSKLEMMKCVVVYWIGVSSDVVEAVDKACGGI 300

Query: 301 SCLKTRLKVIEVSAKVLEAIAFGNIVLPTEKRCDAVNVWIGFARRTKPLVGHPEHDDDDG 360
           SCLKTRLKVIEVSAKVLEAIAFGNIVLPTEKRCDAVNVWIGFARRTKPLVGHPEHDDDDG
Sbjct: 301 SCLKTRLKVIEVSAKVLEAIAFGNIVLPTEKRCDAVNVWIGFARRTKPLVGHPEHDDDDG 360

Query: 361 DAEAPKINLDSEVWQSLESAIVSIVLTLPSNSQADILSDWLQSKHAKYPDLTEAFEVWCY 420
           DAEAPKINLDSEVWQSLESAIVSIVLTLPSNSQADILSDWLQSKHAKYPDLTEAFEVWCY
Sbjct: 361 DAEAPKINLDSEVWQSLESAIVSIVLTLPSNSQADILSDWLQSKHAKYPDLTEAFEVWCY 420

Query: 421 RSKAAKRRLSFLSHANRVS 439
           RSKAAKRRLSFLSHANRVS
Sbjct: 421 RSKAAKRRLSFLSHANRVS 439



>Os06g0129200 Conserved hypothetical protein
          Length = 433

 Score =  250 bits (638), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 161/429 (37%), Positives = 239/429 (55%), Gaps = 31/429 (7%)

Query: 12  KIGDLATSDVVVRLRTPEGRDEWLYCHSGVLAAGSRYFADRLSDDWPTCQILGSRYCVEV 71
           K GD  TSDV V  +  + + EW  CHS VL+  S+YFAD     W +   +GS  C+ V
Sbjct: 11  KFGDQTTSDVRVCFKRADDQAEWFCCHSSVLSGNSKYFAD-----WLSRNDIGSNNCIGV 65

Query: 72  HCQELDLSPHVTALRLLY--AAEPCSRF-GVRGALGVLQAAAHLACPRVAAACVDYLESA 128
            C   D   +V  L+L+Y  A      F  VR A+GVL+A+  L C  +  +C++YLE+A
Sbjct: 66  DCISADYEHYVKVLKLIYLPAESIIDSFESVRSAVGVLRASTLLKCELITRSCIEYLEAA 125

Query: 129 PWDEADEEEILRTIPCLGPQYE-CVLARLRPIDPAPVAGILLSAFRHATSTRSPP----Q 183
            WDE +EEEIL     LG +    +LARL+  + + V  + +SA R ATS  SP      
Sbjct: 126 SWDEKEEEEILEVAQSLGSEEAVALLARLQAPNVSAVKNVFISAIRFATSMESPSPPFLD 185

Query: 184 ELKSAAQEQLEYMLTEXXXXXXXXXXXXIVRSQVKDCVAALLSRFSGFTSSILMEQGEAP 243
           +LK++AQEQ+++ML E             VRS V++ +  L S        +  E  + P
Sbjct: 186 DLKTSAQEQIDFMLHEDDDTALVTMDED-VRSVVREGLKKLFSTLKIGLDLLTSEYEQLP 244

Query: 244 LGHGDAEVQQELHSLVSDISWVCQILSKLEMMKCVVVYWIGVSSDVVEAVD--KACGGIS 301
                 + +Q +   ++DI W+  +L+K+EMM   V  W  +S  V+  V   K   G+ 
Sbjct: 245 -----EQAEQRVLCSLADIDWMANVLTKIEMMNEFVSGWSEISGYVLSVVQDKKYSSGLW 299

Query: 302 CLKTRLKVIEVSAKVLEAIAFGNIVLPTEKRCDAVNVWIGFARRTKPLVGHPEHDDDDGD 361
            +K +L  IEV+ K  +A+ +G++V P   R   + +W+ F + TK L+     DD    
Sbjct: 300 LVKAKL--IEVTGKAFDAVGYGSVVFPASSRVHFLRMWLPFMQTTKRLLDEKSKDD---- 353

Query: 362 AEAPKINLDSEVWQSLESAIVSIVLTLPSNSQADILSDWLQS-KHAKYPDLTEAFEVWCY 420
              P+  +D++++Q++E AIVS+VL LPS  QADIL +W+++ +  +YPDLTEAFEVWCY
Sbjct: 354 -AIPQ--MDADLFQNIEGAIVSLVLALPSGDQADILGEWMKNAEQFRYPDLTEAFEVWCY 410

Query: 421 RSKAAKRRL 429
           RSK AKRRL
Sbjct: 411 RSKTAKRRL 419



>Os07g0123500 Thioredoxin-related domain containing protein
          Length = 527

 Score = 75.5 bits (184), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 102/432 (23%), Positives = 180/432 (41%), Gaps = 68/432 (15%)

Query: 13  IGDLATSDVVVRLRTPEGRDEWLYCHSGVLAAGSRYFADRLSDDWPTCQILGSRYCVEVH 72
            G L TSD+ V L   EG    +  H  +LA  S +FAD+LS   P         C+EV 
Sbjct: 123 FGQLHTSDLKVMLYGREGVAVKMIVHKNILAENSTFFADKLSRQSPVS-------CIEVS 175

Query: 73  -CQELDLSPHVTALRLLYAAEPCSRF---GVRGALGVLQAAAHLACPRVAAACVDYLESA 128
            C+++++   V  + L+Y  +   R     V   L +L+ A  L  P    +C++YLE+ 
Sbjct: 176 DCEDVEI--FVETVGLMYCKDVKQRLIKQAVARVLRILKVAESLGFPTCIMSCLNYLEAV 233

Query: 129 PWDEADEEEILRTIPCLGPQYECVLARLRPI------DPAPVAGILLSAFRHATSTRSPP 182
           PW   +EE +L +I  L  +   V   L+ +       P+     ++     ++  R   
Sbjct: 234 PWVGDEEENVLSSIRQLHCENYGVSPLLKRVASDLTNPPSDTLAHIIELVLKSSDDRG-R 292

Query: 183 QELKSAAQEQLEYMLTEXXXXXXXXXXXXIVR--SQVKDCVAALLSRFSGFTSSILMEQG 240
           +E+KS   +    +L E            +V   S  ++C+ +L + F   +     EQ 
Sbjct: 293 REMKSLVLK----LLKENNIWTNGSSDSCVVTFYSSCRNCLESLSNLFRQASEPEFSEQS 348

Query: 241 EAPLGHGDAEVQQELHSLVSDISWVCQILSKLEMMKCVVVYWIGVSSDVVEAVDKACGGI 300
                     + +++     ++ W+ +IL+               ++D + ++  + G +
Sbjct: 349 ----SDSKEVIFRQITLEADNLLWLAEILADRN------------AADELTSIWASQGEL 392

Query: 301 SCLKTRLKVIE------VSAKVLEAIAFGNIVLPTEKRCDAVNVWIGFARRTKPLVGHPE 354
           + L  R+ V+       V+A++  A+  G  +   E R   ++VW+      +PL+    
Sbjct: 393 AKLHCRIPVMHRHLISCVTARLFVAVGKGEALPSKETRQLLLDVWL------QPLM---- 442

Query: 355 HDDDDGDAEAPKINLDSEVWQSLESAIVSIVLTLPSNSQADILSDWLQSKHAKY----PD 410
             DD    +      D +V   +E  I   +LTLP   Q  IL  WL  +  K     P+
Sbjct: 443 --DDYNWLQHGCRWFDRKV---IEEGIGQTILTLPLEDQQSILLTWL-GRFLKVGDSCPN 496

Query: 411 LTEAFEVWCYRS 422
           L  AFEVW  R+
Sbjct: 497 LQRAFEVWWRRT 508



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.134    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,163,386
Number of extensions: 640228
Number of successful extensions: 1660
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1650
Number of HSP's successfully gapped: 5
Length of query: 439
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 335
Effective length of database: 11,605,545
Effective search space: 3887857575
Effective search space used: 3887857575
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)