BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0662600 Os07g0662600|AK103399
         (249 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0662600  RNA-binding region RNP-1 (RNA recognition moti...   430   e-121
Os05g0129400  Ankyrin repeat containing protein                    69   3e-12

>Os07g0662600 RNA-binding region RNP-1 (RNA recognition motif) domain containing
           protein
          Length = 249

 Score =  430 bits (1105), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 209/209 (100%), Positives = 209/209 (100%)

Query: 41  LKRLDGLGKRGVCYLSRVPPNMNPSHVRQMLSKYGEVQRIYLVPEGQGHRKHTNVRAKAY 100
           LKRLDGLGKRGVCYLSRVPPNMNPSHVRQMLSKYGEVQRIYLVPEGQGHRKHTNVRAKAY
Sbjct: 41  LKRLDGLGKRGVCYLSRVPPNMNPSHVRQMLSKYGEVQRIYLVPEGQGHRKHTNVRAKAY 100

Query: 101 TEGWIEFSKKSVAKRVANLLNGEQIGGKKRSPFYYDIWNIKYLKKFKWDDLVGEIAEKTH 160
           TEGWIEFSKKSVAKRVANLLNGEQIGGKKRSPFYYDIWNIKYLKKFKWDDLVGEIAEKTH
Sbjct: 101 TEGWIEFSKKSVAKRVANLLNGEQIGGKKRSPFYYDIWNIKYLKKFKWDDLVGEIAEKTH 160

Query: 161 IREQKLNLEIAAAKKQRDHYLSNVEKSRTLKHIQERRKKKQKTEGAEFNEVREEKIARPI 220
           IREQKLNLEIAAAKKQRDHYLSNVEKSRTLKHIQERRKKKQKTEGAEFNEVREEKIARPI
Sbjct: 161 IREQKLNLEIAAAKKQRDHYLSNVEKSRTLKHIQERRKKKQKTEGAEFNEVREEKIARPI 220

Query: 221 PQKKPVEETDAKTKPKLPKDILAGVFGGP 249
           PQKKPVEETDAKTKPKLPKDILAGVFGGP
Sbjct: 221 PQKKPVEETDAKTKPKLPKDILAGVFGGP 249



>Os05g0129400 Ankyrin repeat containing protein
          Length = 122

 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/39 (84%), Positives = 36/39 (92%), Gaps = 2/39 (5%)

Query: 41  LKRLDGLGKRGVCYLSRVPPNMNPSHV--RQMLSKYGEV 77
           LKRLD LGKRGVCYLSRVPPNMNPSHV  R++LSK+GEV
Sbjct: 84  LKRLDDLGKRGVCYLSRVPPNMNPSHVRLRRLLSKHGEV 122



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,446,662
Number of extensions: 303144
Number of successful extensions: 1066
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1066
Number of HSP's successfully gapped: 2
Length of query: 249
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 151
Effective length of database: 11,918,829
Effective search space: 1799743179
Effective search space used: 1799743179
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 155 (64.3 bits)