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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0129400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ankyrin repeat containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.94 (0.0356) R2 : 0.452
β1 : 0.969 (0.152) R2dD : 0.0735 R2D : 0.101
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.84 (0.225) R2dE : 0.568 R2E : 0.0123
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 7.25 (0.795) R2dD*E : 0.215 R2D*E : -0.0555
γ1 : 0.246 (0.0764) R2dN8 : 0.0194 R2N8 : -0.0304
σ : 0.629
deviance : 182.28
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 1.083
memory length : 1532
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
174.68 0.621 3.95 0.989 0.628 3.49 1.07 6.67 0.221 24 0.9701 1473 -- --
191.26 0.644 3.87 1.72 0.605 2.21 1.73 -- 0.355 23.4 2.484 1484 -- --
178.03 0.621 3.95 0.895 0.464 3.6 -- 7.23 0.214 0.271 1.018 1492 -- --
200.81 0.66 3.86 1.54 0.657 2.16 -- -- 0.325 0.314 2.205 1479 -- --
182.28 0.629 3.94 0.969 -- 3.84 -- 7.25 0.246 -- 1.083 1532 -- --
243.09 0.731 3.92 1.17 0.87 -- 1.36 -- 0.0543 23.8 -- -- -- --
250.82 0.742 3.92 1.11 0.867 -- -- -- 0.0466 0.112 -- -- -- --
203.93 0.665 3.85 1.46 -- 2.48 -- -- 0.299 -- 2.342 1590 -- --
239.93 0.721 3.88 -- 0.856 1.64 -- -- 0.256 0.0831 4.371 2903 -- --
298.16 0.807 3.9 1.14 -- -- -- -- 0.0592 -- -- -- -- --
283.5 0.788 3.95 -- 0.882 -- -- -- -0.0774 0.182 -- -- -- --
250.71 0.737 3.86 -- -- 2.3 -- -- 0.276 -- 4.17 3107 -- --
332.51 0.851 3.93 -- -- -- -- -- -0.0674 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 169.49 wind 5 43200 > th dose independent rect. 11 1
2 169.51 wind 5 43200 < th dose independent rect. 11 1
3 169.93 radiation 1 14400 > th dose independent rect. 18 11
4 169.97 radiation 1 14400 < th dose independent rect. 18 3
5 169.97 radiation 1 14400 < th dose independent rect. 18 7
11 170.03 radiation 1 14400 < th dose independent rect. 18 1
14 170.04 radiation 1 14400 > th dose independent rect. 18 1
25 170.54 wind 5 43200 < th dose independent rect. 10 3
26 170.56 wind 5 43200 > th dose independent rect. 10 3
27 170.70 radiation 40 14400 < th dose dependent rect. 18 9
28 170.71 radiation 40 14400 < th dose dependent rect. 18 7
32 170.94 radiation 40 14400 < th dose dependent rect. 18 3
36 170.97 radiation 1 14400 < th dose dependent rect. 18 7
40 171.01 radiation 1 14400 < th dose dependent rect. 18 4
45 171.04 radiation 1 14400 < th dose dependent rect. 18 1
62 171.49 humidity 90 43200 > th dose dependent rect. 21 2
68 171.56 radiation 40 14400 < th dose dependent rect. 18 1
74 171.64 wind 3 43200 > th dose dependent rect. 11 1
88 171.80 humidity 90 43200 > th dose independent rect. 21 2
93 172.18 humidity 90 43200 < th dose independent rect. 21 1
95 172.30 humidity 90 43200 > th dose independent rect. 9 2
96 172.39 radiation 1 14400 < th dose dependent rect. 7 17
98 172.40 radiation 1 14400 < th dose dependent rect. 7 15
101 172.41 humidity 90 43200 > th dose dependent rect. 18 5
102 172.41 radiation 1 14400 < th dose dependent rect. 7 12
111 172.59 humidity 90 43200 > th dose dependent rect. 15 9
112 172.61 humidity 90 43200 > th dose dependent rect. 17 7
120 172.74 radiation 1 14400 < th dose independent rect. 7 14
121 172.74 radiation 1 14400 < th dose independent rect. 7 18
125 172.75 radiation 1 14400 < th dose independent rect. 7 12
132 172.82 wind 3 43200 > th dose dependent rect. 10 3
138 172.90 radiation 1 14400 < th dose dependent rect. 9 15
142 172.91 radiation 1 14400 > th dose dependent rect. 17 12
143 172.91 radiation 1 14400 < th dose dependent rect. 9 13
157 172.93 radiation 1 14400 < th dose dependent rect. 9 10
163 173.01 radiation 1 14400 < th dose dependent rect. 12 12
167 173.02 radiation 1 14400 < th dose dependent sin 19 NA
168 173.02 radiation 1 14400 < th dose dependent rect. 12 10
174 173.03 radiation 1 14400 > th dose dependent rect. 17 2
195 173.04 radiation 1 14400 < th dose dependent rect. 12 7
200 173.04 radiation 20 14400 > th dose dependent rect. 16 15
202 173.05 temperature 25 14400 > th dose dependent rect. 17 1
207 173.06 radiation 1 14400 > th dose independent rect. 18 21
225 173.14 radiation 40 14400 < th dose dependent rect. 17 12
237 173.17 radiation 1 14400 > th dose independent rect. 7 12
249 173.18 radiation 20 14400 > th dose dependent rect. 16 1
281 173.26 radiation 1 14400 < th dose independent rect. 18 21
283 173.26 radiation 1 14400 < th dose dependent rect. 16 8
286 173.27 radiation 1 14400 < th dose dependent rect. 16 6
297 173.29 radiation 1 14400 < th dose dependent rect. 16 3
311 173.33 humidity 90 43200 < th dose independent rect. 17 2
328 173.35 temperature 30 14400 < th dose independent rect. 15 15
334 173.36 temperature 30 14400 < th dose independent rect. 15 6
335 173.36 temperature 30 14400 < th dose independent rect. 15 10
347 173.37 temperature 30 14400 < th dose independent rect. 15 4
393 173.53 temperature 30 14400 > th dose independent rect. 15 3
394 173.53 wind 5 43200 < th dose independent rect. 5 9
395 173.53 radiation 1 14400 < th dose dependent rect. 18 23
413 173.57 humidity 80 43200 > th dose independent rect. 11 4
445 173.66 humidity 90 43200 > th dose independent rect. 17 6
450 173.69 radiation 30 14400 < th dose independent rect. 15 6
457 173.70 radiation 1 14400 < th dose independent sin 22 NA
463 173.70 radiation 30 14400 < th dose independent rect. 15 10
470 173.71 humidity 90 43200 < th dose independent rect. 10 1
474 173.71 radiation 30 14400 < th dose independent rect. 15 16
478 173.72 radiation 30 14400 < th dose independent rect. 15 4
484 173.73 temperature 30 14400 > th dose independent rect. 15 1
492 173.74 radiation 30 14400 < th dose independent rect. 15 2
500 173.76 wind 5 43200 > th dose independent rect. 5 9
501 173.76 temperature 25 14400 > th dose dependent rect. 15 15
508 173.78 temperature 25 14400 > th dose dependent rect. 15 9
515 173.81 radiation 1 14400 < th dose dependent rect. 18 21
548 173.88 humidity 90 43200 < th dose independent rect. 17 5
557 173.90 radiation 10 1440 < th dose dependent rect. 17 13
558 173.90 radiation 40 1440 < th dose dependent rect. 17 13
565 173.93 radiation 1 14400 > th dose independent rect. 5 1
574 173.96 radiation 1 14400 < th dose independent rect. 5 1
593 174.03 radiation 1 14400 < th dose independent rect. 24 21
597 174.04 radiation 1 14400 < th dose independent no NA NA
604 174.04 radiation 1 14400 < th dose independent rect. 24 19
618 174.04 radiation 1 14400 < th dose independent rect. 20 23
660 174.06 humidity 90 43200 > th dose independent rect. 13 11
661 174.06 radiation 1 14400 < th dose independent rect. 12 23
671 174.08 radiation 1 14400 < th dose independent rect. 17 17
699 174.11 radiation 1 14400 < th dose independent rect. 17 15
700 174.11 radiation 1 14400 > th dose independent rect. 18 16
701 174.11 radiation 1 14400 < th dose independent rect. 9 23
727 174.16 humidity 80 43200 > th dose dependent rect. 10 1
730 174.17 temperature 30 14400 < th dose independent sin 14 NA
762 174.21 humidity 80 43200 > th dose independent rect. 14 1
773 174.22 radiation 1 14400 > th dose independent sin 22 NA
823 174.28 temperature 30 14400 > th dose independent sin 14 NA
824 174.28 humidity 80 43200 < th dose independent rect. 11 4
882 174.35 radiation 1 1440 < th dose dependent rect. 18 7
892 174.37 temperature 25 14400 > th dose dependent sin 15 NA
927 174.40 radiation 1 1440 < th dose dependent rect. 18 3
938 174.42 humidity 80 43200 > th dose dependent rect. 10 3
940 174.44 radiation 1 14400 > th dose independent no NA NA
992 174.45 radiation 1 14400 > th dose independent rect. 11 23