BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0129400 Os05g0129400|AK102359
         (122 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0129400  Ankyrin repeat containing protein                   174   1e-44
Os07g0662600  RNA-binding region RNP-1 (RNA recognition moti...    69   7e-13

>Os05g0129400 Ankyrin repeat containing protein
          Length = 122

 Score =  174 bits (442), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 90/122 (73%), Positives = 90/122 (73%)

Query: 1   MGLAMFGHTPLFPLHHXXXXXXXXXXNDTSPLAIETSRGTCEVGSHGAMMAXXXXXXXXX 60
           MGLAMFGHTPLFPLHH          NDTSPLAIETSRGTCEVGSHGAMMA         
Sbjct: 1   MGLAMFGHTPLFPLHHAAAAADDDDDNDTSPLAIETSRGTCEVGSHGAMMAGSSESEYYS 60

Query: 61  XXXXXXXXXXXXXKGVEEKREWALKRLDDLGKRGVCYLSRVPPNMNPSHVRLRRLLSKHG 120
                        KGVEEKREWALKRLDDLGKRGVCYLSRVPPNMNPSHVRLRRLLSKHG
Sbjct: 61  EEEVGWEEEGLGSKGVEEKREWALKRLDDLGKRGVCYLSRVPPNMNPSHVRLRRLLSKHG 120

Query: 121 EV 122
           EV
Sbjct: 121 EV 122



>Os07g0662600 RNA-binding region RNP-1 (RNA recognition motif) domain containing
           protein
          Length = 249

 Score = 68.9 bits (167), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 33/39 (84%), Positives = 36/39 (92%), Gaps = 2/39 (5%)

Query: 84  LKRLDDLGKRGVCYLSRVPPNMNPSHVRLRRLLSKHGEV 122
           LKRLD LGKRGVCYLSRVPPNMNPSHV  R++LSK+GEV
Sbjct: 41  LKRLDGLGKRGVCYLSRVPPNMNPSHV--RQMLSKYGEV 77



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.137    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,379,796
Number of extensions: 89098
Number of successful extensions: 137
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 2
Length of query: 122
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 34
Effective length of database: 12,440,969
Effective search space: 422992946
Effective search space used: 422992946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)