Os07g0662600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os07g0662600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.85 | 0.372 | 11.2 | -0.181 | 0.352 | -1.05 | 0.674 | 0.147 | -0.084 | 19.6 | 29.27 | 100 | -- | -- |
| 62.86 | 0.369 | 11.2 | -0.161 | 0.345 | -1.06 | 0.663 | -- | -0.0801 | 19.6 | 29.2 | 108 | -- | -- |
| 64.08 | 0.373 | 11.3 | -0.202 | 0.344 | -1.06 | -- | 0.12 | -0.0876 | 19.7 | 29.4 | 107 | -- | -- |
| 64.09 | 0.373 | 11.2 | -0.181 | 0.345 | -1.08 | -- | -- | -0.0786 | 19.8 | 29.4 | 107 | -- | -- |
| 69.18 | 0.387 | 11.2 | -0.176 | -- | -1.15 | -- | 0.141 | -0.102 | -- | 29.47 | 195 | -- | -- |
| 78.3 | 0.415 | 11.2 | 0.0912 | 0.556 | -- | 0.766 | -- | 0.133 | 17.5 | -- | -- | -- | -- |
| 79.72 | 0.418 | 11.2 | 0.0888 | 0.561 | -- | -- | -- | 0.136 | 17.4 | -- | -- | -- | -- |
| 68.96 | 0.387 | 11.2 | -0.222 | -- | -1.2 | -- | -- | -0.121 | -- | 29.02 | 216 | -- | -- |
| 64.85 | 0.375 | 11.2 | -- | 0.352 | -1 | -- | -- | -0.0475 | 19.5 | 29.4 | 107 | -- | -- |
| 96.1 | 0.458 | 11.2 | 0.0699 | -- | -- | -- | -- | 0.122 | -- | -- | -- | -- | -- |
| 79.92 | 0.418 | 11.2 | -- | 0.559 | -- | -- | -- | 0.126 | 17.4 | -- | -- | -- | -- |
| 70.15 | 0.39 | 11.2 | -- | -- | -1.13 | -- | -- | -0.0786 | -- | 29.3 | 208 | -- | -- |
| 96.23 | 0.458 | 11.2 | -- | -- | -- | -- | -- | 0.115 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.57 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 13 | 55.12 | temperature | 20 | 90 | > th | dose independent | rect. | 8 | 20 |
| 19 | 55.85 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 41 | 57.20 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 21 |
| 49 | 57.75 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 83 | 58.96 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 18 |
| 87 | 59.03 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 103 | 59.33 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 9 |
| 120 | 59.63 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 121 | 59.66 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 135 | 59.87 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 10 |
| 150 | 60.16 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 9 |
| 156 | 60.25 | temperature | 20 | 90 | > th | dose independent | rect. | 20 | 18 |
| 165 | 60.31 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 9 |
| 195 | 60.69 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 21 |
| 206 | 60.76 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 14 |
| 209 | 60.79 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 20 |
| 343 | 61.89 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 9 |
| 370 | 62.05 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 380 | 62.11 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 391 | 62.22 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 421 | 62.40 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 467 | 62.70 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 493 | 62.80 | temperature | 15 | 270 | > th | dose dependent | sin | 9 | NA |
| 518 | 62.98 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 533 | 63.04 | temperature | 15 | 90 | > th | dose dependent | sin | 7 | NA |
| 617 | 63.45 | temperature | 20 | 10 | > th | dose independent | rect. | 22 | 16 |
| 637 | 63.52 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 652 | 63.55 | temperature | 30 | 270 | < th | dose dependent | sin | 9 | NA |
| 658 | 63.58 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 694 | 63.68 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 714 | 63.73 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 715 | 63.73 | temperature | 15 | 30 | > th | dose dependent | rect. | 9 | 5 |
| 746 | 63.80 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 754 | 63.82 | temperature | 20 | 1440 | > th | dose independent | rect. | 14 | 17 |
| 771 | 63.84 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 786 | 63.87 | temperature | 15 | 10 | > th | dose dependent | rect. | 24 | 14 |
| 807 | 63.91 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 818 | 63.93 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 8 |
| 823 | 63.94 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 829 | 63.95 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 831 | 63.95 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 881 | 64.00 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 898 | 64.03 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 899 | 64.03 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 8 |
| 910 | 64.04 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 937 | 64.08 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 948 | 64.09 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 7 |
| 973 | 64.11 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 978 | 64.11 | temperature | 20 | 90 | < th | dose independent | rect. | 11 | 21 |