BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0662600 Os07g0662600|AK103399
         (249 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G56510.1  | chr3:20944348-20946235 REVERSE LENGTH=258          223   8e-59

>AT3G56510.1 | chr3:20944348-20946235 REVERSE LENGTH=258
          Length = 257

 Score =  223 bits (568), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 113/208 (54%), Positives = 146/208 (70%), Gaps = 9/208 (4%)

Query: 50  RGVCYLSRVPPNMNPSHVRQMLSKYGEVQRIYLVPE---GQGHRKHTN-VRAKAYTEGWI 105
           RGVCYLSR+PP+M+   +R +L++YGE+ RIYL PE    Q HRK     R + ++EGW+
Sbjct: 49  RGVCYLSRIPPHMDHVRLRHILAQYGELGRIYLAPEDSEAQVHRKRAGGFRGQRFSEGWV 108

Query: 106 EFSKKSVAKRVANLLNGEQIGGKKRSPFYYDIWNIKYLKKFKWDDLVGEIAEKTHIREQK 165
           EF+KKSVAKRVA++LNGEQIGGKK+S  YYDIWNIKYL KFKWDDL  EIA K+ IREQK
Sbjct: 109 EFAKKSVAKRVADMLNGEQIGGKKKSSVYYDIWNIKYLTKFKWDDLTEEIAYKSAIREQK 168

Query: 166 LNLEIAAAKKQRDHYLSNVEKSRTLKHIQERRKKKQKTE-----GAEFNEVREEKIARPI 220
           LN+ ++AAK+++D YLS +EKSR +  I  R +KK+K +      AE   V   +     
Sbjct: 169 LNMVLSAAKREKDFYLSKIEKSRAMTEIDARMEKKRKIQEESGSNAEAAPVFPPRAIFQF 228

Query: 221 PQKKPVEETDAKTKPKLPKDILAGVFGG 248
            QKK +E   +++KP L  D LA VFGG
Sbjct: 229 RQKKSIENETSQSKPGLSTDFLASVFGG 256



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,836,361
Number of extensions: 205668
Number of successful extensions: 896
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 898
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 153
Effective length of database: 8,474,633
Effective search space: 1296618849
Effective search space used: 1296618849
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 110 (47.0 bits)