BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0661400 Os07g0661400|AK107202
         (154 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0661400  Conserved hypothetical protein                      196   7e-51
Os03g0353400  Similar to Poly(A)-binding protein C-terminal ...    83   7e-17

>Os07g0661400 Conserved hypothetical protein
          Length = 154

 Score =  196 bits (497), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 103/154 (66%), Positives = 103/154 (66%)

Query: 1   MSAMAMSSLXXXXXXXXXXXXRRVEDFSPEWWELVKTTAWFRDHWFRQHQMYEDAAAEED 60
           MSAMAMSSL            RRVEDFSPEWWELVKTTAWFRDHWFRQHQMYEDAAAEED
Sbjct: 1   MSAMAMSSLNPNAAPFIPAAFRRVEDFSPEWWELVKTTAWFRDHWFRQHQMYEDAAAEED 60

Query: 61  HHRQVFXXXXXXXXXXXXXXXXXXXXXXXXFYXXXXXXXXXXXXXXXLDADVLRALSLNS 120
           HHRQVF                        FY               LDADVLRALSLNS
Sbjct: 61  HHRQVFDDDLAALLPDDSLDLLDMVDTDDLFYTPDPPVHHKPTTTPTLDADVLRALSLNS 120

Query: 121 PRLGGAGMVRHAEKPAQFVAAKGGAARHVIHQPR 154
           PRLGGAGMVRHAEKPAQFVAAKGGAARHVIHQPR
Sbjct: 121 PRLGGAGMVRHAEKPAQFVAAKGGAARHVIHQPR 154



>Os03g0353400 Similar to Poly(A)-binding protein C-terminal interacting protein 6
          Length = 160

 Score = 83.2 bits (204), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 74/161 (45%), Gaps = 8/161 (4%)

Query: 1   MSAMAMSSLXXXXXXXXXXXXRRVEDFSPEWWELVKTTAWFRDHWFRQHQMYEDAAAEED 60
           MSA A+SSL            R+VEDFSP+WW+LVKTTAWFRDHWF +HQ   D  A+  
Sbjct: 1   MSATAVSSLNPDAPLFIPAAFRQVEDFSPQWWDLVKTTAWFRDHWFHEHQQL-DEMADSL 59

Query: 61  HHRQVFXXXXXXXXXXXXXXXXXXXXXXXXFYXXXXXXXXXXXXXXXLDAD-VLRALSLN 119
                                         F                L  D VL+ALSL 
Sbjct: 60  ALHDAAADDDDLAGLLPDDAFDDDDDDDLFFDQTHNLLVDPPQPPAALKTDAVLKALSLV 119

Query: 120 SPRLGGA--GM---VRHAEKPAQFVAA-KGGAARHVIHQPR 154
           SP+ G A  G+    RH+EKP ++  + + G A  VIHQPR
Sbjct: 120 SPKGGDAPRGLREKPRHSEKPTKYAGSPRSGGAPRVIHQPR 160



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.132    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,762,145
Number of extensions: 109067
Number of successful extensions: 339
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 2
Length of query: 154
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 62
Effective length of database: 12,232,113
Effective search space: 758391006
Effective search space used: 758391006
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 151 (62.8 bits)