Os07g0661400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0661400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.37 | 0.359 | 11.4 | -0.695 | 1.77 | -3.7 | 1.13 | -1.11 | 0.236 | 4.51 | 0.1529 | 745 | -- | -- |
| 58.78 | 0.357 | 11.4 | -0.749 | 1.72 | -3.67 | 0.402 | -- | 0.212 | 4.52 | 0.17 | 750 | -- | -- |
| 58.91 | 0.357 | 11.4 | -0.741 | 1.54 | -3.5 | -- | 0.136 | 0.218 | 4.5 | 0.1678 | 759 | -- | -- |
| 58.93 | 0.358 | 11.4 | -0.735 | 1.54 | -3.49 | -- | -- | 0.226 | 4.49 | 0.17 | 759 | -- | -- |
| 64.2 | 0.373 | 11.4 | -0.676 | -- | -2.35 | -- | -0.33 | 0.183 | -- | 0.03293 | 971 | -- | -- |
| 81.58 | 0.423 | 11.4 | -0.346 | 1.38 | -- | 0.463 | -- | 0.347 | 19.7 | -- | -- | -- | -- |
| 82.19 | 0.425 | 11.4 | -0.358 | 1.39 | -- | -- | -- | 0.347 | 19.7 | -- | -- | -- | -- |
| 64.02 | 0.373 | 11.4 | -0.653 | -- | -2.3 | -- | -- | 0.212 | -- | 0.17 | 969 | -- | -- |
| 71.73 | 0.394 | 11.4 | -- | 1.08 | -2.95 | -- | -- | 0.287 | 4.14 | 0.1713 | 771 | -- | -- |
| 185.74 | 0.637 | 11.4 | -0.376 | -- | -- | -- | -- | 0.327 | -- | -- | -- | -- | -- |
| 85.56 | 0.433 | 11.4 | -- | 1.39 | -- | -- | -- | 0.387 | 19.7 | -- | -- | -- | -- |
| 74.61 | 0.402 | 11.4 | -- | -- | -2.22 | -- | -- | 0.302 | -- | 0.17 | 949 | -- | -- |
| 189.47 | 0.642 | 11.4 | -- | -- | -- | -- | -- | 0.369 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.15 | temperature | 10 | 270 | > th | dose dependent | rect. | 14 | 12 |
| 2 | 60.17 | radiation | 1 | 720 | < th | dose dependent | sin | 14 | NA |
| 3 | 60.26 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 15 |
| 10 | 60.93 | radiation | 1 | 720 | < th | dose dependent | rect. | 2 | 23 |
| 17 | 61.23 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 20 |
| 26 | 61.57 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 18 |
| 34 | 61.71 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 4 |
| 45 | 61.94 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 8 |
| 47 | 62.09 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 49 | 62.11 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 56 | 62.18 | wind | 9 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 80 | 62.39 | radiation | 1 | 4320 | < th | dose dependent | rect. | 4 | 2 |
| 85 | 62.44 | radiation | 1 | 4320 | < th | dose dependent | rect. | 24 | 6 |
| 86 | 62.44 | radiation | 1 | 4320 | < th | dose dependent | rect. | 22 | 8 |
| 92 | 62.46 | wind | 5 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 97 | 62.48 | radiation | 20 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 105 | 62.50 | radiation | 20 | 14400 | < th | dose independent | rect. | 22 | 10 |
| 120 | 62.61 | wind | 5 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 136 | 62.68 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 2 |
| 145 | 62.79 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 2 |
| 157 | 62.87 | radiation | 1 | 720 | < th | dose dependent | rect. | 10 | 13 |
| 159 | 62.87 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 16 |
| 162 | 62.88 | radiation | 1 | 4320 | < th | dose dependent | rect. | 18 | 23 |
| 168 | 62.90 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 170 | 62.92 | radiation | 1 | 4320 | < th | dose dependent | rect. | 16 | 15 |
| 172 | 62.93 | wind | 7 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 175 | 62.94 | temperature | 15 | 43200 | > th | dose independent | rect. | 5 | 5 |
| 179 | 62.95 | radiation | 10 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 193 | 62.96 | temperature | 15 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 205 | 62.99 | radiation | 1 | 4320 | < th | dose dependent | rect. | 12 | 19 |
| 207 | 63.00 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 208 | 63.00 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 13 |
| 217 | 63.05 | radiation | 1 | 4320 | < th | dose dependent | sin | 12 | NA |
| 221 | 63.07 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 237 | 63.09 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 19 |
| 241 | 63.11 | temperature | 15 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 242 | 63.11 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 2 |
| 243 | 63.11 | radiation | 1 | 720 | > th | dose independent | rect. | 14 | 4 |
| 257 | 63.13 | radiation | 1 | 4320 | < th | dose dependent | rect. | 18 | 21 |
| 258 | 63.14 | temperature | 15 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 262 | 63.16 | radiation | 10 | 14400 | < th | dose independent | sin | 9 | NA |
| 263 | 63.16 | temperature | 15 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 281 | 63.18 | radiation | 1 | 4320 | < th | dose dependent | rect. | 16 | 22 |
| 333 | 63.24 | atmosphere | 1010 | 14400 | > th | dose dependent | sin | 14 | NA |
| 340 | 63.24 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 14 | 15 |
| 344 | 63.25 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 347 | 63.25 | temperature | 15 | 43200 | > th | dose independent | rect. | 4 | 12 |
| 361 | 63.26 | temperature | 15 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 364 | 63.26 | radiation | 10 | 14400 | < th | dose independent | rect. | 4 | 8 |
| 404 | 63.27 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 9 | 20 |
| 432 | 63.29 | radiation | 40 | 14400 | < th | dose independent | rect. | 15 | 18 |
| 500 | 63.30 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 8 | 16 |
| 510 | 63.30 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 3 | 21 |
| 522 | 63.31 | atmosphere | 1010 | 14400 | > th | dose dependent | no | NA | NA |
| 559 | 63.31 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 18 | 23 |
| 631 | 63.34 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 761 | 63.39 | atmosphere | 1010 | 14400 | > th | dose dependent | sin | 23 | NA |
| 762 | 63.39 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 8 | 8 |
| 776 | 63.40 | temperature | 15 | 43200 | < th | dose independent | rect. | 3 | 11 |
| 798 | 63.41 | radiation | 40 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 815 | 63.42 | radiation | 40 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 846 | 63.43 | temperature | 15 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 851 | 63.43 | radiation | 40 | 14400 | < th | dose independent | rect. | 22 | 11 |
| 862 | 63.43 | radiation | 1 | 4320 | < th | dose dependent | rect. | 4 | 15 |
| 933 | 63.45 | radiation | 1 | 4320 | < th | dose dependent | rect. | 22 | 21 |
| 948 | 63.46 | radiation | 40 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 953 | 63.46 | radiation | 1 | 4320 | < th | dose dependent | no | NA | NA |