BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0657900 Os07g0657900|AJ582621
(488 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0657900 Similar to Thioredoxin reductase 901 0.0
Os06g0327300 Similar to Thioredoxin reductase 1 (EC 1.8.1.9... 302 4e-82
Os02g0713400 Similar to Thioredoxin reductase 1 (EC 1.8.1.9... 293 1e-79
AK058859 120 2e-27
>Os07g0657900 Similar to Thioredoxin reductase
Length = 488
Score = 901 bits (2328), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/463 (94%), Positives = 437/463 (94%)
Query: 26 DEEAPASPPPSDLGKGVENLVIIGSGPXXXXXXXXXXXXNLKPVVFEGYQVGGVPGGQLM 85
DEEAPASPPPSDLGKGVENLVIIGSGP NLKPVVFEGYQVGGVPGGQLM
Sbjct: 26 DEEAPASPPPSDLGKGVENLVIIGSGPAGYTAAIYAARANLKPVVFEGYQVGGVPGGQLM 85
Query: 86 TTTEVENFPGFPDGVTGPDLMDKMRKQAERWGAELHQEDVEFVNVKSRPFVIRSSDREVK 145
TTTEVENFPGFPDGVTGPDLMDKMRKQAERWGAELHQEDVEFVNVKSRPFVIRSSDREVK
Sbjct: 86 TTTEVENFPGFPDGVTGPDLMDKMRKQAERWGAELHQEDVEFVNVKSRPFVIRSSDREVK 145
Query: 146 CHSVIIATGAAAKRLRLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAI 205
CHSVIIATGAAAKRLRLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAI
Sbjct: 146 CHSVIIATGAAAKRLRLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAI 205
Query: 206 YLTKYARHVHLLVRKDQLRASKAMQDRVLNNPNITVHFNTEAVDVVSNPKGQMSGIQLKR 265
YLTKYARHVHLLVRKDQLRASKAMQDRVLNNPNITVHFNTEAVDVVSNPKGQMSGIQLKR
Sbjct: 206 YLTKYARHVHLLVRKDQLRASKAMQDRVLNNPNITVHFNTEAVDVVSNPKGQMSGIQLKR 265
Query: 266 TDTGEESVLEVKGLFYGIGHTPNSQLLQGQIDLDDAGYILVEEGTAKTSVDGVFAAGDVQ 325
TDTGEESVLEVKGLFYGIGHTPNSQLLQGQIDLDDAGYILVEEGTAKTSVDGVFAAGDVQ
Sbjct: 266 TDTGEESVLEVKGLFYGIGHTPNSQLLQGQIDLDDAGYILVEEGTAKTSVDGVFAAGDVQ 325
Query: 326 DHEWRQAVTAAGSGCVAALSVERYLVANDLLVEFHQPVREEKEKEITDRDVEMGFDISHT 385
DHEWRQAVTAAGSGCVAALSVERYLVANDLLVEFHQPVREEKEKEITDRDVEMGFDISHT
Sbjct: 326 DHEWRQAVTAAGSGCVAALSVERYLVANDLLVEFHQPVREEKEKEITDRDVEMGFDISHT 385
Query: 386 KHRGQYALRKVYHESPRLVCVLYTSPTCGPCRTLKPILSKVIDEYNEHVHFVXXXXXXXX 445
KHRGQYALRKVYHESPRLVCVLYTSPTCGPCRTLKPILSKVIDEYNEHVHFV
Sbjct: 386 KHRGQYALRKVYHESPRLVCVLYTSPTCGPCRTLKPILSKVIDEYNEHVHFVEIDIEEDP 445
Query: 446 XXXXXXGIMGTPCVQFFKNKEMLRTVSGVKMKKEYREFIESNK 488
GIMGTPCVQFFKNKEMLRTVSGVKMKKEYREFIESNK
Sbjct: 446 EIAEAAGIMGTPCVQFFKNKEMLRTVSGVKMKKEYREFIESNK 488
>Os06g0327300 Similar to Thioredoxin reductase 1 (EC 1.8.1.9) (NADPH-dependent
thioredoxin reductase 1) (NTR 1)
Length = 340
Score = 302 bits (773), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 156/308 (50%), Positives = 212/308 (68%), Gaps = 2/308 (0%)
Query: 45 LVIIGSGPXXXXXXXXXXXXNLKPVVFEGYQVGGVP-GGQLMTTTEVENFPGFPDGVTGP 103
+ IIGSGP LKPV+FEG+ + GGQL TTT+VENFPGFPDG+ G
Sbjct: 22 VCIIGSGPAAHTAAVYAARAELKPVLFEGFLANDIAAGGQLTTTTDVENFPGFPDGILGA 81
Query: 104 DLMDKMRKQAERWGAELHQEDVEFVNVKSRPFVIRSSDREVKCHSVIIATGAAAKRLRLP 163
DLMD+ R Q+ R+G + E V V++ SRPF + S D V +V++ATGA A+RL
Sbjct: 82 DLMDRCRAQSVRFGTRILTETVTAVDLSSRPFRVASGDTVVHADAVVVATGAVARRLHFA 141
Query: 164 REDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKYARHVHLLVRKDQL 223
D FW+RGISACA+CDGA+P+F+ + +AVVGGGD+A EEA +LTKY V+++ R++
Sbjct: 142 GSDAFWNRGISACAVCDGAAPIFRNKPIAVVGGGDSAMEEANFLTKYGSRVYIIHRRNAF 201
Query: 224 RASKAMQDRVLNNPNITVHFNTEAVDVVSNPKGQ-MSGIQLKRTDTGEESVLEVKGLFYG 282
RASK MQ R L+NP I V +++E V+ G ++G+++K +GE S L+V GLF+
Sbjct: 202 RASKIMQARALSNPKIQVVWDSEVVEAYGGADGGPLAGVKVKNVVSGEVSDLQVAGLFFA 261
Query: 283 IGHTPNSQLLQGQIDLDDAGYILVEEGTAKTSVDGVFAAGDVQDHEWRQAVTAAGSGCVA 342
IGH P ++ L GQ++LD GY++ + G+ TSV GVFAAGDVQD ++RQA+TAAGSGC+A
Sbjct: 262 IGHEPATKFLGGQLELDSDGYVVTKPGSTHTSVKGVFAAGDVQDKKYRQAITAAGSGCMA 321
Query: 343 ALSVERYL 350
AL E YL
Sbjct: 322 ALDAEHYL 329
>Os02g0713400 Similar to Thioredoxin reductase 1 (EC 1.8.1.9) (NADPH-dependent
thioredoxin reductase 1) (NTR 1)
Length = 331
Score = 293 bits (751), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 150/308 (48%), Positives = 210/308 (68%), Gaps = 2/308 (0%)
Query: 45 LVIIGSGPXXXXXXXXXXXXNLKPVVFEGYQVGGVP-GGQLMTTTEVENFPGFPDGVTGP 103
+ IIGSGP LKPV+FEG+ + GGQL TTT+VENFPGFP+G+ G
Sbjct: 13 VCIIGSGPSAHTAAIYAARAELKPVLFEGWLANDIAAGGQLTTTTDVENFPGFPEGILGG 72
Query: 104 DLMDKMRKQAERWGAELHQEDVEFVNVKSRPFVIRSSDREVKCHSVIIATGAAAKRLRLP 163
+LMD+ R Q+ R+G + E V V+ +RPF + S V +V++ATGA A+RL
Sbjct: 73 ELMDRCRAQSLRFGTSIISETVTAVDFSARPFRVASDSTTVLADAVVVATGAVARRLHFA 132
Query: 164 REDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKYARHVHLLVRKDQL 223
D +W+RGISACA+CDGA+P+F+ + +AV+GGGD+A EE+ +LTKY HV+++ R++
Sbjct: 133 GSDAYWNRGISACAVCDGAAPIFRNKPIAVIGGGDSAMEESNFLTKYGSHVYIIHRRNTF 192
Query: 224 RASKAMQDRVLNNPNITVHFNTEAVDVVSNPKGQ-MSGIQLKRTDTGEESVLEVKGLFYG 282
RASK MQ R L+NP I V +++E V+ G ++G+++K TG+ S L+V GLF+
Sbjct: 193 RASKIMQARALSNPKIQVFWDSEVVEAYGGEGGGPLAGVKVKNLVTGKISDLQVSGLFFA 252
Query: 283 IGHTPNSQLLQGQIDLDDAGYILVEEGTAKTSVDGVFAAGDVQDHEWRQAVTAAGSGCVA 342
IGH P ++ L GQ++LD GY+ + G+ TSV GVFAAGDVQD ++RQA+TAAGSGC+A
Sbjct: 253 IGHEPATKFLGGQLELDADGYVATKPGSTHTSVKGVFAAGDVQDKKYRQAITAAGSGCMA 312
Query: 343 ALSVERYL 350
AL E YL
Sbjct: 313 ALDAEHYL 320
>AK058859
Length = 144
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/116 (50%), Positives = 80/116 (68%), Gaps = 7/116 (6%)
Query: 229 MQDRVLNNPNITVHFNTEAVDVVSNPKGQ---MSGIQLKRTDTGEESVLEVKGLFYGIGH 285
M R+L +P +TVHFNT V + KG + +++K T T EE ++ GLFY IGH
Sbjct: 1 MAKRLLAHPKVTVHFNT----VPTEAKGDGELLKAVRVKDTKTSEERDMDANGLFYAIGH 56
Query: 286 TPNSQLLQGQIDLDDAGYILVEEGTAKTSVDGVFAAGDVQDHEWRQAVTAAGSGCV 341
P + L++GQ+DLD GYI+ GTA+TSV GVFAAGDV D ++RQA+T+AG+GC+
Sbjct: 57 LPATSLVKGQVDLDSDGYIITTPGTAQTSVKGVFAAGDVADKKYRQAITSAGTGCI 112
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.135 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,834,467
Number of extensions: 667966
Number of successful extensions: 1561
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1556
Number of HSP's successfully gapped: 4
Length of query: 488
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 383
Effective length of database: 11,553,331
Effective search space: 4424925773
Effective search space used: 4424925773
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)