Os07g0657900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Thioredoxin reductase.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0657900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Thioredoxin reductase.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.09 | 0.297 | 13.7 | -1.13 | 0.613 | 1.12 | 0.226 | 0.686 | -0.443 | 0.323 | 23.15 | 711 | -- | -- |
| 40.65 | 0.297 | 13.6 | -1.04 | 0.621 | 1.06 | 0.123 | -- | -0.42 | 0.278 | 23.37 | 754 | -- | -- |
| 40.28 | 0.296 | 13.7 | -1.13 | 0.621 | 1.12 | -- | 0.641 | -0.439 | 0.303 | 23.1 | 756 | -- | -- |
| 40.66 | 0.297 | 13.6 | -1.05 | 0.618 | 0.997 | -- | -- | -0.436 | 0.414 | 23.37 | 795 | -- | -- |
| 51.27 | 0.335 | 13.6 | -1.08 | -- | 0.971 | -- | -0.00715 | -0.402 | -- | 29.73 | 8 | -- | -- |
| 53.81 | 0.344 | 13.7 | -1.31 | 0.518 | -- | 0.198 | -- | -0.594 | 0.808 | -- | -- | -- | -- |
| 53.97 | 0.344 | 13.7 | -1.32 | 0.518 | -- | -- | -- | -0.595 | 0.777 | -- | -- | -- | -- |
| 51.26 | 0.335 | 13.6 | -1.08 | -- | 0.972 | -- | -- | -0.403 | -- | 29.78 | 8 | -- | -- |
| 49.77 | 0.329 | 13.6 | -- | 0.531 | 1.2 | -- | -- | -0.208 | 0.776 | 19.82 | 47520 | -- | -- |
| 70.72 | 0.393 | 13.7 | -1.3 | -- | -- | -- | -- | -0.585 | -- | -- | -- | -- | -- |
| 99.62 | 0.467 | 13.6 | -- | 0.497 | -- | -- | -- | -0.448 | 0.656 | -- | -- | -- | -- |
| 67.37 | 0.382 | 13.6 | -- | -- | 1.18 | -- | -- | -0.209 | -- | 19.6 | 47520 | -- | -- |
| 115.11 | 0.501 | 13.6 | -- | -- | -- | -- | -- | -0.441 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.04 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 20 |
| 2 | 40.10 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 18 |
| 6 | 40.37 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 12 |
| 13 | 40.43 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 16 | 40.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 18 | 40.48 | temperature | 25 | 720 | < th | dose dependent | sin | 10 | NA |
| 20 | 40.49 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 21 | 40.49 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 18 |
| 24 | 40.49 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 21 |
| 40 | 40.55 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 21 |
| 59 | 40.60 | temperature | 20 | 720 | > th | dose independent | sin | 9 | NA |
| 87 | 40.69 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 20 |
| 104 | 40.72 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 122 | 40.76 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 16 |
| 129 | 40.78 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 165 | 40.89 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 170 | 40.90 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 23 |
| 196 | 40.96 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 219 | 41.01 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 230 | 41.04 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 240 | 41.05 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 23 |
| 242 | 41.06 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 243 | 41.06 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 17 |
| 245 | 41.06 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 5 |
| 253 | 41.07 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 23 |
| 255 | 41.07 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 309 | 41.16 | wind | 5 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 310 | 41.16 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 318 | 41.17 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 321 | 41.18 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 336 | 41.20 | temperature | 20 | 720 | < th | dose independent | rect. | 10 | 23 |
| 344 | 41.21 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 23 |
| 378 | 41.26 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 389 | 41.29 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 407 | 41.31 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 15 |
| 410 | 41.31 | wind | 3 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 445 | 41.37 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 23 |
| 512 | 41.45 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 557 | 41.52 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 590 | 41.56 | temperature | 15 | 720 | > th | dose dependent | sin | 9 | NA |
| 728 | 41.72 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 13 |
| 878 | 41.85 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 880 | 41.85 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 994 | 41.95 | humidity | 80 | 14400 | > th | dose dependent | rect. | 13 | 1 |