BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0657900 Os07g0657900|AJ582621
(488 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G41680.1 | chr2:17376349-17379028 REVERSE LENGTH=530 749 0.0
AT2G17420.1 | chr2:7564357-7566219 FORWARD LENGTH=379 320 1e-87
AT4G35460.1 | chr4:16842218-16843740 FORWARD LENGTH=376 311 7e-85
>AT2G41680.1 | chr2:17376349-17379028 REVERSE LENGTH=530
Length = 529
Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/450 (77%), Positives = 394/450 (87%)
Query: 39 GKGVENLVIIGSGPXXXXXXXXXXXXNLKPVVFEGYQVGGVPGGQLMTTTEVENFPGFPD 98
G+ +EN+VIIGSGP NLKPVVFEGYQ+GGVPGGQLMTTTEVENFPGFPD
Sbjct: 80 GEIIENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQMGGVPGGQLMTTTEVENFPGFPD 139
Query: 99 GVTGPDLMDKMRKQAERWGAELHQEDVEFVNVKSRPFVIRSSDREVKCHSVIIATGAAAK 158
G+TGPDLM+KMRKQAERWGAEL+ EDVE ++V + PF +++S+R+VKCHS+I ATGA A+
Sbjct: 140 GITGPDLMEKMRKQAERWGAELYPEDVESLSVTTAPFTVQTSERKVKCHSIIYATGATAR 199
Query: 159 RLRLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKYARHVHLLV 218
RLRLPRE+EFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEA+YLTKYARHVHLLV
Sbjct: 200 RLRLPREEEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEALYLTKYARHVHLLV 259
Query: 219 RKDQLRASKAMQDRVLNNPNITVHFNTEAVDVVSNPKGQMSGIQLKRTDTGEESVLEVKG 278
R+DQLRASKAMQDRV+NNPNITVH+NTE VDV+SN KGQMSGI L+R DTGEE+ LE KG
Sbjct: 260 RRDQLRASKAMQDRVINNPNITVHYNTETVDVLSNTKGQMSGILLRRLDTGEETELEAKG 319
Query: 279 LFYGIGHTPNSQLLQGQIDLDDAGYILVEEGTAKTSVDGVFAAGDVQDHEWRQAVTAAGS 338
LFYGIGH+PNSQLL+GQ++LD +GY+LV EGT+ TSV+GVFAAGDVQDHEWRQAVTAAGS
Sbjct: 320 LFYGIGHSPNSQLLEGQVELDSSGYVLVREGTSNTSVEGVFAAGDVQDHEWRQAVTAAGS 379
Query: 339 GCVAALSVERYLVANDLLVEFHQPVREEKEKEITDRDVEMGFDISHTKHRGQYALRKVYH 398
GC+AALS ERYL +N+LLVEFHQP EE +KE T RDV+ FDI+ TKH+GQYALRK+YH
Sbjct: 380 GCIAALSAERYLTSNNLLVEFHQPQTEEAKKEFTQRDVQEKFDITLTKHKGQYALRKLYH 439
Query: 399 ESPRLVCVLYTSPTCGPCRTLKPILSKVIDEYNEHVHFVXXXXXXXXXXXXXXGIMGTPC 458
ESPR++ VLYTSPTCGPCRTLKPIL+KV+DEYN VHFV GIMGTPC
Sbjct: 440 ESPRVILVLYTSPTCGPCRTLKPILNKVVDEYNHDVHFVEIDIEEDQEIAEAAGIMGTPC 499
Query: 459 VQFFKNKEMLRTVSGVKMKKEYREFIESNK 488
VQFFKNKEMLRT+SGVKMKKEYREFIE+NK
Sbjct: 500 VQFFKNKEMLRTISGVKMKKEYREFIEANK 529
>AT2G17420.1 | chr2:7564357-7566219 FORWARD LENGTH=379
Length = 378
Score = 320 bits (820), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 156/312 (50%), Positives = 215/312 (68%), Gaps = 6/312 (1%)
Query: 45 LVIIGSGPXXXXXXXXXXXXNLKPVVFEGYQVGGV-PGGQLMTTTEVENFPGFPDGVTGP 103
+ I+GSGP LKP++FEG+ + PGGQL TTT+VENFPGFP+G+ G
Sbjct: 56 VCIVGSGPAAHTAAIYASRAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGI 115
Query: 104 DLMDKMRKQAERWGAELHQEDVEFVNVKSRPFVIRSSDREVKCHSVIIATGAAAKRLRLP 163
D+++K RKQ+ER+G + E V V+ S+PF + + R V SVII+TGA AKRL
Sbjct: 116 DIVEKFRKQSERFGTTIFTETVNKVDFSSKPFKLFTDSRTVLADSVIISTGAVAKRLSFT 175
Query: 164 REDE----FWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKYARHVHLLVR 219
E FW+RGISACA+CDGA+P+F+ + L V+GGGD+A EEA +LTKY V+++ R
Sbjct: 176 GSGEGNGGFWNRGISACAVCDGAAPIFRNKPLVVIGGGDSAMEEANFLTKYGSKVYIIHR 235
Query: 220 KDQLRASKAMQDRVLNNPNITVHFNTEAVDVVSNPKGQ-MSGIQLKRTDTGEESVLEVKG 278
+D RASK MQ R L+NP I V +N+ V+ + G+ + G+++K TG+ S L+V G
Sbjct: 236 RDTFRASKIMQQRALSNPKIEVIWNSAVVEAYGDENGRVLGGLKVKNVVTGDVSDLKVSG 295
Query: 279 LFYGIGHTPNSQLLQGQIDLDDAGYILVEEGTAKTSVDGVFAAGDVQDHEWRQAVTAAGS 338
LF+ IGH P ++ L GQ++LD+ GY++ + GT KTSV GVFAAGDVQD ++RQA+TAAG+
Sbjct: 296 LFFAIGHEPATKFLDGQLELDEDGYVVTKPGTTKTSVVGVFAAGDVQDKKYRQAITAAGT 355
Query: 339 GCVAALSVERYL 350
GC+AAL E YL
Sbjct: 356 GCMAALDAEHYL 367
>AT4G35460.1 | chr4:16842218-16843740 FORWARD LENGTH=376
Length = 375
Score = 311 bits (796), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 153/312 (49%), Positives = 212/312 (67%), Gaps = 6/312 (1%)
Query: 45 LVIIGSGPXXXXXXXXXXXXNLKPVVFEGYQVGGV-PGGQLMTTTEVENFPGFPDGVTGP 103
L I+GSGP LKP++FEG+ + PGGQL TTT+VENFPGFP+G+ G
Sbjct: 53 LCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGV 112
Query: 104 DLMDKMRKQAERWGAELHQEDVEFVNVKSRPFVIRSSDREVKCHSVIIATGAAAKRLRLP 163
+L DK RKQ+ER+G + E V V+ S+PF + + + + +VI+ATGA AKRL
Sbjct: 113 ELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILATGAVAKRLSFV 172
Query: 164 REDE----FWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKYARHVHLLVR 219
E FW+RGISACA+CDGA+P+F+ + LAV+GGGD+A EEA +LTKY V+++ R
Sbjct: 173 GSGEASGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHR 232
Query: 220 KDQLRASKAMQDRVLNNPNITVHFNTEAVDVVSN-PKGQMSGIQLKRTDTGEESVLEVKG 278
+D RASK MQ R L+NP I V +N+ V+ + + + G+++K TG+ S L+V G
Sbjct: 233 RDAFRASKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSG 292
Query: 279 LFYGIGHTPNSQLLQGQIDLDDAGYILVEEGTAKTSVDGVFAAGDVQDHEWRQAVTAAGS 338
LF+ IGH P ++ L G ++LD GY++ + GT +TSV GVFAAGDVQD ++RQA+TAAG+
Sbjct: 293 LFFAIGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAITAAGT 352
Query: 339 GCVAALSVERYL 350
GC+AAL E YL
Sbjct: 353 GCMAALDAEHYL 364
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.135 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,860,296
Number of extensions: 407011
Number of successful extensions: 1029
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1029
Number of HSP's successfully gapped: 3
Length of query: 488
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 386
Effective length of database: 8,310,137
Effective search space: 3207712882
Effective search space used: 3207712882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)