BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0656800 Os07g0656800|AK099536
         (185 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0656800  Conserved hypothetical protein                      259   6e-70
Os08g0517600  SAM (and some other nucleotide) binding motif ...   102   2e-22

>Os07g0656800 Conserved hypothetical protein
          Length = 185

 Score =  259 bits (663), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 126/142 (88%), Positives = 126/142 (88%)

Query: 44  GMGRSDAXXXXXXXXXXXXXXXXRALSYGKAEYWDARYVEEGGAPYDWYQRYAALRPFVR 103
           GMGRSDA                RALSYGKAEYWDARYVEEGGAPYDWYQRYAALRPFVR
Sbjct: 44  GMGRSDAGVGGGGGGEGGGGGGGRALSYGKAEYWDARYVEEGGAPYDWYQRYAALRPFVR 103

Query: 104 RFAPPESRVLMIGCGSALMSEDMVDDGYTEIMNIDISSVVIEIMRKKHFNIPQLQCILNC 163
           RFAPPESRVLMIGCGSALMSEDMVDDGYTEIMNIDISSVVIEIMRKKHFNIPQLQCILNC
Sbjct: 104 RFAPPESRVLMIGCGSALMSEDMVDDGYTEIMNIDISSVVIEIMRKKHFNIPQLQCILNC 163

Query: 164 FSILFLSPPPLKFTIHWSPYDT 185
           FSILFLSPPPLKFTIHWSPYDT
Sbjct: 164 FSILFLSPPPLKFTIHWSPYDT 185



>Os08g0517600 SAM (and some other nucleotide) binding motif domain containing
           protein
          Length = 197

 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 67/91 (73%), Gaps = 1/91 (1%)

Query: 68  ALSYGKAEYWDARYVEEGGAPYDWYQRYAALRPFVRRFAPPESRVLMIGCGSALMSEDMV 127
           A +YG+A YWD RY +E G P+DWYQ+Y AL P +  +     R+L+ GCG+++  E+MV
Sbjct: 13  AQAYGEAWYWDERYRKEAG-PFDWYQKYPALAPLLAVYVRRHHRLLLAGCGNSVFGENMV 71

Query: 128 DDGYTEIMNIDISSVVIEIMRKKHFNIPQLQ 158
           DDGY +I+NIDISSVVI+ M+KK+ + P L+
Sbjct: 72  DDGYQDIVNIDISSVVIDQMKKKYRDKPHLK 102



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.139    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,246,208
Number of extensions: 183345
Number of successful extensions: 377
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 376
Number of HSP's successfully gapped: 2
Length of query: 185
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 90
Effective length of database: 12,075,471
Effective search space: 1086792390
Effective search space used: 1086792390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)