Os08g0517600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SAM (and some other nucleotide) binding motif domain containing protein.
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Os08g0517600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SAM (and some other nucleotide) binding motif domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.03 | 0.385 | 10.2 | -0.595 | 1.33 | 1.67 | -0.361 | 0.641 | -0.141 | 22.6 | 18.9 | 282 | -- | -- |
| 67.53 | 0.383 | 10.2 | -0.652 | 1.33 | 1.65 | -0.3 | -- | -0.149 | 22.5 | 19.1 | 286 | -- | -- |
| 67.55 | 0.383 | 10.2 | -0.565 | 1.34 | 1.66 | -- | 0.737 | -0.136 | 22.6 | 18.8 | 275 | -- | -- |
| 67.99 | 0.384 | 10.2 | -0.697 | 1.34 | 1.68 | -- | -- | -0.171 | 22.6 | 19.11 | 279 | -- | -- |
| 130.15 | 0.531 | 10.2 | -0.893 | -- | 2.44 | -- | 0.19 | -0.279 | -- | 16.7 | 648 | -- | -- |
| 114.25 | 0.501 | 10.1 | -0.299 | 1.5 | -- | -0.0702 | -- | 0.119 | 21 | -- | -- | -- | -- |
| 114.27 | 0.501 | 10.1 | -0.297 | 1.51 | -- | -- | -- | 0.119 | 21 | -- | -- | -- | -- |
| 130.18 | 0.531 | 10.2 | -0.928 | -- | 2.45 | -- | -- | -0.292 | -- | 16.8 | 648 | -- | -- |
| 79.42 | 0.415 | 10.2 | -- | 1.35 | 1.4 | -- | -- | -0.0604 | 22.3 | 20.05 | 279 | -- | -- |
| 244.22 | 0.73 | 10.1 | -0.295 | -- | -- | -- | -- | 0.109 | -- | -- | -- | -- | -- |
| 116.59 | 0.505 | 10.1 | -- | 1.51 | -- | -- | -- | 0.152 | 21 | -- | -- | -- | -- |
| 150.69 | 0.572 | 10.2 | -- | -- | 2.11 | -- | -- | -0.149 | -- | 17.2 | 627 | -- | -- |
| 246.52 | 0.733 | 10.1 | -- | -- | -- | -- | -- | 0.142 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 64.51 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 22 |
| 4 | 64.85 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 15 |
| 17 | 65.72 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 61 | 66.80 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 65 | 66.87 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 72 | 67.15 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 22 |
| 84 | 67.46 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 15 |
| 99 | 67.59 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 121 | 67.95 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 126 | 68.00 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 140 | 68.17 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 209 | 69.01 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 7 |
| 213 | 69.07 | temperature | 20 | 270 | > th | dose dependent | sin | 1 | NA |
| 215 | 69.07 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 235 | 69.24 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 249 | 69.44 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 18 |
| 276 | 69.62 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 290 | 69.80 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 10 |
| 298 | 69.86 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 311 | 69.94 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 12 |
| 410 | 70.76 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 13 |
| 501 | 71.43 | temperature | 30 | 270 | < th | dose dependent | sin | 23 | NA |
| 618 | 72.24 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 672 | 72.58 | temperature | 25 | 270 | > th | dose independent | sin | 23 | NA |
| 729 | 72.89 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 15 |
| 754 | 73.00 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 923 | 73.77 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |