Os07g0656800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0656800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.69 | 0.307 | 11 | -1.71 | 0.807 | -0.614 | 1.16 | 0.98 | -0.0555 | 3 | 23.04 | 763 | -- | -- |
| 43.63 | 0.308 | 11 | -1.74 | 0.754 | -0.648 | 1.11 | -- | -0.0815 | 2.55 | 18.98 | 763 | -- | -- |
| 46.95 | 0.319 | 11 | -1.74 | 0.818 | -0.625 | -- | 0.668 | -0.0547 | 2.95 | 23.03 | 762 | -- | -- |
| 46.9 | 0.319 | 11 | -1.74 | 0.782 | -0.666 | -- | -- | -0.0623 | 2.71 | 20.11 | 764 | -- | -- |
| 57.96 | 0.355 | 11 | -1.64 | -- | -1.2 | -- | 0.647 | 0.108 | -- | 10.93 | 533 | -- | -- |
| 51.16 | 0.335 | 11 | -1.85 | 1.07 | -- | 1.11 | -- | -0.171 | 4.01 | -- | -- | -- | -- |
| 54.69 | 0.346 | 11 | -1.87 | 1.08 | -- | -- | -- | -0.178 | 4.09 | -- | -- | -- | -- |
| 50.41 | 0.331 | 11 | -1.74 | -- | -1.18 | -- | -- | -0.0424 | -- | 3.029 | 537 | -- | -- |
| 125 | 0.521 | 10.9 | -- | 0.727 | -0.941 | -- | -- | 0.167 | 1.61 | 20 | 814 | -- | -- |
| 118.2 | 0.508 | 11 | -1.82 | -- | -- | -- | -- | -0.149 | -- | -- | -- | -- | -- |
| 146.6 | 0.566 | 11 | -- | 1.04 | -- | -- | -- | 0.0303 | 4.12 | -- | -- | -- | -- |
| 128.66 | 0.528 | 10.9 | -- | -- | -1.39 | -- | -- | 0.217 | -- | 10.05 | 559 | -- | -- |
| 205.92 | 0.67 | 11 | -- | -- | -- | -- | -- | 0.0535 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.07 | radiation | 40 | 720 | > th | dose independent | rect. | 12 | 22 |
| 2 | 42.09 | radiation | 20 | 720 | < th | dose independent | rect. | 11 | 18 |
| 3 | 42.09 | radiation | 10 | 720 | > th | dose dependent | rect. | 12 | 22 |
| 4 | 42.10 | radiation | 40 | 720 | < th | dose dependent | rect. | 11 | 18 |
| 5 | 42.11 | radiation | 40 | 720 | < th | dose dependent | rect. | 9 | 20 |
| 14 | 42.32 | radiation | 20 | 720 | < th | dose independent | rect. | 8 | 21 |
| 18 | 42.38 | radiation | 40 | 720 | < th | dose dependent | rect. | 2 | 16 |
| 20 | 42.44 | radiation | 40 | 720 | < th | dose dependent | rect. | 1 | 21 |
| 30 | 42.55 | radiation | 40 | 720 | < th | dose dependent | rect. | 1 | 19 |
| 43 | 42.71 | radiation | 30 | 720 | > th | dose independent | sin | 19 | NA |
| 46 | 42.72 | radiation | 20 | 720 | < th | dose independent | rect. | 6 | 23 |
| 56 | 42.77 | radiation | 20 | 720 | < th | dose independent | rect. | 1 | 21 |
| 58 | 42.78 | radiation | 30 | 720 | < th | dose independent | rect. | 13 | 16 |
| 63 | 42.81 | radiation | 20 | 720 | > th | dose independent | rect. | 8 | 8 |
| 77 | 42.86 | radiation | 20 | 720 | < th | dose independent | rect. | 1 | 19 |
| 78 | 42.86 | radiation | 20 | 720 | > th | dose dependent | sin | 13 | NA |
| 79 | 42.87 | radiation | 20 | 720 | < th | dose independent | rect. | 2 | 16 |
| 82 | 42.88 | radiation | 30 | 720 | > th | dose independent | rect. | 9 | 23 |
| 131 | 42.95 | radiation | 40 | 720 | > th | dose independent | rect. | 12 | 2 |
| 134 | 42.96 | radiation | 40 | 720 | < th | dose independent | rect. | 23 | 23 |
| 172 | 43.02 | radiation | 20 | 720 | > th | dose independent | rect. | 6 | 10 |
| 210 | 43.09 | radiation | 10 | 720 | > th | dose dependent | sin | 19 | NA |
| 218 | 43.12 | radiation | 30 | 720 | < th | dose independent | sin | 15 | NA |
| 221 | 43.13 | radiation | 20 | 720 | > th | dose independent | no | NA | NA |
| 356 | 43.17 | radiation | 40 | 720 | < th | dose independent | rect. | 1 | 17 |
| 370 | 43.19 | radiation | 30 | 720 | > th | dose independent | sin | 13 | NA |
| 518 | 43.21 | radiation | 40 | 720 | < th | dose independent | rect. | 8 | 23 |
| 547 | 43.23 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 551 | 43.24 | radiation | 40 | 720 | < th | dose dependent | no | NA | NA |
| 552 | 43.24 | radiation | 1 | 720 | > th | dose dependent | rect. | 4 | 13 |
| 592 | 43.28 | radiation | 10 | 720 | > th | dose dependent | rect. | 7 | 10 |
| 609 | 43.29 | radiation | 40 | 720 | < th | dose independent | rect. | 1 | 19 |
| 610 | 43.29 | radiation | 40 | 720 | < th | dose independent | rect. | 15 | 23 |
| 634 | 43.31 | radiation | 1 | 720 | > th | dose dependent | no | NA | NA |
| 702 | 43.32 | radiation | 10 | 720 | > th | dose dependent | rect. | 12 | 4 |
| 719 | 43.32 | radiation | 40 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 848 | 43.35 | radiation | 40 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 954 | 43.38 | radiation | 40 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 955 | 43.39 | radiation | 20 | 720 | < th | dose independent | no | NA | NA |
| 956 | 43.39 | radiation | 40 | 720 | < th | dose independent | rect. | 1 | 13 |
| 960 | 43.39 | radiation | 40 | 720 | < th | dose independent | rect. | 17 | 23 |
| 962 | 43.40 | radiation | 40 | 720 | < th | dose dependent | sin | 15 | NA |