BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0656800 Os07g0656800|AK099536
         (185 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G60910.1  | chr3:22501727-22503182 FORWARD LENGTH=253          122   1e-28
AT3G17365.2  | chr3:5947144-5948766 REVERSE LENGTH=278             95   2e-20
AT4G34360.1  | chr4:16432011-16433752 FORWARD LENGTH=249           62   2e-10

>AT3G60910.1 | chr3:22501727-22503182 FORWARD LENGTH=253
          Length = 252

 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 55/89 (61%), Positives = 73/89 (82%), Gaps = 1/89 (1%)

Query: 70  SYGKAEYWDARYVEEGGAPYDWYQRYAALRPFVRRFAPPESRVLMIGCGSALMSEDMVDD 129
           +YG A YWDARYV++  + +DWYQ Y++LRPFVR F    SRVLM+GCG++LMSEDMV D
Sbjct: 12  NYGDALYWDARYVQDALS-FDWYQCYSSLRPFVRSFVSTSSRVLMVGCGNSLMSEDMVKD 70

Query: 130 GYTEIMNIDISSVVIEIMRKKHFNIPQLQ 158
           GY +IMN+DISSV IE+M+ K+ ++PQL+
Sbjct: 71  GYEDIMNVDISSVAIEMMQTKYASVPQLK 99



>AT3G17365.2 | chr3:5947144-5948766 REVERSE LENGTH=278
          Length = 277

 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/90 (51%), Positives = 64/90 (71%), Gaps = 2/90 (2%)

Query: 70  SYGKAEYWDARYVEEGGAPYDWYQRYAALRPFVRRFAPPES-RVLMIGCGSALMSEDMVD 128
           SY +  YWD RY  E   P+DWYQ+Y+ L P +  + P  + RVL+IGCG++  SE MVD
Sbjct: 9   SYSEQWYWDDRYKNES-EPFDWYQKYSPLAPLINLYVPQRNQRVLVIGCGNSAFSEGMVD 67

Query: 129 DGYTEIMNIDISSVVIEIMRKKHFNIPQLQ 158
           DGY ++++IDISSVVI+ M KK+ + PQL+
Sbjct: 68  DGYEDVVSIDISSVVIDTMIKKYSDRPQLK 97



>AT4G34360.1 | chr4:16432011-16433752 FORWARD LENGTH=249
          Length = 248

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 2/83 (2%)

Query: 68  ALSYGKAEYWDARYVEEGGAPYDWYQRYAALRPFVRRFAPPESRVLMIGCGSALMSEDMV 127
           AL+Y    YWD R+  E    Y+W++ Y+  +  +     P S VL +GCG++ + E++ 
Sbjct: 12  ALTYLDPHYWDERFSSE--EHYEWFKDYSHFQHLIISNIKPSSSVLELGCGNSQLCEELY 69

Query: 128 DDGYTEIMNIDISSVVIEIMRKK 150
            DG  +I  ID+SSV +E M+ +
Sbjct: 70  KDGIVDITCIDLSSVAVEKMQSR 92



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.139    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,219,205
Number of extensions: 113499
Number of successful extensions: 256
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 3
Length of query: 185
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 92
Effective length of database: 8,556,881
Effective search space: 787233052
Effective search space used: 787233052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 108 (46.2 bits)