BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0655400 Os07g0655400|AK102349
         (316 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0655400  Conserved hypothetical protein                      508   e-144
Os04g0103300  Conserved hypothetical protein                      226   1e-59

>Os07g0655400 Conserved hypothetical protein
          Length = 316

 Score =  508 bits (1309), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 264/316 (83%), Positives = 264/316 (83%)

Query: 1   MMXXXXXXXXXXIPTGGGGFFRGYTKLCKGXXXXXXXXXXXXXXFPSAVTYLALVPGRTI 60
           MM          IPTGGGGFFRGYTKLCKG              FPSAVTYLALVPGRTI
Sbjct: 1   MMSSSSSPPPPSIPTGGGGFFRGYTKLCKGLAVILLLVHLLIQLFPSAVTYLALVPGRTI 60

Query: 61  PFAWNLITGGYVELTIPGVIISIVXXXXXXXXXXXXXXSKELSKFIFVVNFSTSLCVFIT 120
           PFAWNLITGGYVELTIPGVIISIV              SKELSKFIFVVNFSTSLCVFIT
Sbjct: 61  PFAWNLITGGYVELTIPGVIISIVGLLLFGKLLEPLWGSKELSKFIFVVNFSTSLCVFIT 120

Query: 121 AIALYYTTQEESYLYAPLSGFYGVLTGLLVGIKQLMSEQELNLFVLKIKAKWIPSLVALI 180
           AIALYYTTQEESYLYAPLSGFYGVLTGLLVGIKQLMSEQELNLFVLKIKAKWIPSLVALI
Sbjct: 121 AIALYYTTQEESYLYAPLSGFYGVLTGLLVGIKQLMSEQELNLFVLKIKAKWIPSLVALI 180

Query: 181 SVIVSFFVKELVSYLPVILFGIYMSWIYLRYFQRRLETGLKGDXXXXXXXXXXXXXXLRP 240
           SVIVSFFVKELVSYLPVILFGIYMSWIYLRYFQRRLETGLKGD              LRP
Sbjct: 181 SVIVSFFVKELVSYLPVILFGIYMSWIYLRYFQRRLETGLKGDPSEEFSFSSFFPEFLRP 240

Query: 241 VLDPIASIFHRLLCGRSERADARGQTLDTTPLPGSDSIEANRRRERGQRALEQRLAEKLA 300
           VLDPIASIFHRLLCGRSERADARGQTLDTTPLPGSDSIEANRRRERGQRALEQRLAEKLA
Sbjct: 241 VLDPIASIFHRLLCGRSERADARGQTLDTTPLPGSDSIEANRRRERGQRALEQRLAEKLA 300

Query: 301 AVKSSEGTSQDASDKV 316
           AVKSSEGTSQDASDKV
Sbjct: 301 AVKSSEGTSQDASDKV 316



>Os04g0103300 Conserved hypothetical protein
          Length = 318

 Score =  226 bits (577), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 121/281 (43%), Positives = 163/281 (58%), Gaps = 9/281 (3%)

Query: 22  RGYTKLCKGXXXXXXXXXXXXXXFPSAVTYLALVPGRTIPFAWNLITGGYVELTIPGVII 81
           + +T+ CKG               PS++ YLA++P +TIPF W + T GY+E  +PG I 
Sbjct: 32  KEFTRTCKGLVVVLVGGYVLLQLLPSSLDYLAIIPAKTIPFVWTVFTAGYIEQVLPGAIG 91

Query: 82  SIVXXXXXXXXXXXXXXSKELSKFIFVVNFSTSLCVFITAIALYYTTQEESYLYAPLSGF 141
           S +               KE  KFI +VN    +  F  A+ALYY T +ES+L  PLSGF
Sbjct: 92  SSLGLLFCGKDIEPVWGRKEFLKFIILVNSICGVLAFCFAVALYYVTGKESFLVTPLSGF 151

Query: 142 YGVLTGLLVGIKQLMSEQELNL-FVLKIKAKWIPSLVALISVIVSFFVKELVSYLPVILF 200
           +G L G LVG+KQL+   EL + F  KIKAKW+P  V   S I++F V + +++LP +L 
Sbjct: 152 HGALAGFLVGLKQLLPNLELPMCFFWKIKAKWMPFFVLCFSTIMAFIVPDSINFLPTLLS 211

Query: 201 GIYMSWIYLRYFQRRLETGLKGDXXXXXXXXXXXXXXLRPVLDPIASIFHRLLCGRSERA 260
           G+Y+SWIYLRYFQR   TGLKGD              +RPV DP+A++F R+LC RS  +
Sbjct: 212 GMYVSWIYLRYFQRNPLTGLKGDSSDDFSFPSLFPDAMRPVTDPVANLFDRMLCARSRPS 271

Query: 261 DARGQTLDTTPLPGSDSIEANRRRERGQRALEQRLAEKLAA 301
           +          LP SD  +A+RRRERG+R LE+RLA   AA
Sbjct: 272 ELA--------LPVSDPAKASRRRERGERVLEERLAADHAA 304



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.141    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,279,362
Number of extensions: 276186
Number of successful extensions: 726
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 723
Number of HSP's successfully gapped: 2
Length of query: 316
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 215
Effective length of database: 11,762,187
Effective search space: 2528870205
Effective search space used: 2528870205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 156 (64.7 bits)