Os04g0103300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0103300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.34 | 0.222 | 12 | -0.337 | 0.622 | 0.567 | 0.174 | -2.09 | 0.402 | 23 | 27.85 | 3909 | -- | -- |
| 22.74 | 0.222 | 12 | 0.0434 | 0.623 | 0.337 | 0.126 | -- | 0.433 | 23 | 26.43 | 3933 | -- | -- |
| 22.46 | 0.221 | 12 | -0.337 | 0.624 | 0.557 | -- | -1.99 | 0.401 | 23 | 27.74 | 4013 | -- | -- |
| 22.83 | 0.223 | 12 | 0.0498 | 0.626 | 0.332 | -- | -- | 0.439 | 22.9 | 26.85 | 3934 | -- | -- |
| 43.94 | 0.309 | 12 | -0.415 | -- | 0.655 | -- | -1.58 | 0.27 | -- | 24.6 | 2373 | -- | -- |
| 26.03 | 0.239 | 12 | 0.15 | 0.66 | -- | 0.193 | -- | 0.429 | 23 | -- | -- | -- | -- |
| 26.19 | 0.24 | 12 | 0.142 | 0.659 | -- | -- | -- | 0.429 | 23 | -- | -- | -- | -- |
| 44.76 | 0.312 | 12 | -0.00857 | -- | 0.506 | -- | -- | 0.367 | -- | 24.3 | 2357 | -- | -- |
| 22.88 | 0.223 | 12 | -- | 0.625 | 0.345 | -- | -- | 0.433 | 22.9 | 26.7 | 3928 | -- | -- |
| 53.25 | 0.341 | 12 | 0.157 | -- | -- | -- | -- | 0.434 | -- | -- | -- | -- | -- |
| 26.72 | 0.242 | 12 | -- | 0.661 | -- | -- | -- | 0.413 | 23 | -- | -- | -- | -- |
| 44.76 | 0.312 | 12 | -- | -- | 0.504 | -- | -- | 0.368 | -- | 24.3 | 2357 | -- | -- |
| 53.9 | 0.343 | 12 | -- | -- | -- | -- | -- | 0.416 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.80 | temperature | 20.0 | 270 | > th | dose independent | rect. | 11 | 18 |
| 3 | 19.86 | temperature | 20.0 | 270 | > th | dose independent | rect. | 22 | 8 |
| 4 | 19.96 | temperature | 20.0 | 10 | > th | dose independent | rect. | 14 | 16 |
| 18 | 20.38 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 18 |
| 55 | 21.04 | temperature | 20.0 | 10 | > th | dose independent | rect. | 12 | 21 |
| 62 | 21.11 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 8 |
| 76 | 21.23 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 14 | 16 |
| 118 | 21.49 | temperature | 20.0 | 10 | > th | dose independent | rect. | 1 | 5 |
| 149 | 21.72 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 16 | 9 |
| 153 | 21.72 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 24 | 8 |
| 156 | 21.73 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 16 | 4 |
| 162 | 21.74 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 16 | 2 |
| 164 | 21.74 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 23 | 7 |
| 177 | 21.79 | humidity | 90.0 | 30 | > th | dose independent | rect. | 1 | 6 |
| 192 | 21.81 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 1 | 13 |
| 205 | 21.82 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 18 | 11 |
| 212 | 21.83 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 1 | 11 |
| 264 | 21.93 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 6 |
| 265 | 21.93 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 23 | 6 |
| 266 | 21.93 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 6 |
| 269 | 21.95 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 6 |
| 274 | 21.96 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 6 |
| 275 | 21.96 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 6 |
| 276 | 21.96 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 6 |
| 277 | 21.96 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 6 |
| 280 | 21.96 | temperature | 10.0 | 270 | > th | dose independent | rect. | 11 | 18 |
| 291 | 21.97 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 18 |
| 295 | 21.97 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 18 |
| 307 | 22.00 | temperature | 20.0 | 10 | > th | dose independent | rect. | 24 | 9 |
| 324 | 22.02 | radiation | 1.0 | 270 | > th | dose independent | rect. | 4 | 7 |
| 348 | 22.04 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 371 | 22.07 | wind | 9.0 | 270 | < th | dose dependent | rect. | 5 | 6 |
| 408 | 22.11 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 16 | 8 |
| 411 | 22.11 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 9 |
| 427 | 22.13 | radiation | 30.0 | 270 | < th | dose independent | rect. | 15 | 9 |
| 449 | 22.16 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 17 | 6 |
| 452 | 22.16 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 14 | 16 |
| 453 | 22.16 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 17 |
| 468 | 22.18 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 18 | 9 |
| 488 | 22.20 | wind | 9.0 | 270 | < th | dose independent | rect. | 11 | 18 |
| 500 | 22.21 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 513 | 22.21 | atmosphere | 1000.0 | 90 | > th | dose dependent | rect. | 18 | 17 |
| 517 | 22.22 | wind | 1.0 | 270 | > th | dose independent | rect. | 5 | 6 |
| 529 | 22.23 | radiation | 1.0 | 720 | > th | dose independent | rect. | 18 | 11 |
| 530 | 22.23 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 18 | 8 |
| 535 | 22.24 | temperature | 30.0 | 270 | < th | dose independent | rect. | 5 | 6 |
| 543 | 22.25 | radiation | 1.0 | 270 | > th | dose independent | rect. | 11 | 8 |
| 560 | 22.26 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 8 |
| 563 | 22.26 | wind | 7.0 | 270 | < th | dose independent | rect. | 18 | 16 |
| 578 | 22.28 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 11 | 18 |
| 596 | 22.29 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 12 | 21 |
| 608 | 22.31 | radiation | 1.0 | 270 | > th | dose independent | sin | 8 | NA |
| 627 | 22.32 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 24 | 16 |
| 634 | 22.32 | radiation | 30.0 | 4320 | > th | dose dependent | rect. | 15 | 17 |
| 636 | 22.33 | temperature | 10.0 | 270 | > th | dose independent | rect. | 16 | 8 |
| 639 | 22.33 | temperature | 10.0 | 270 | > th | dose independent | rect. | 24 | 16 |
| 640 | 22.33 | humidity | 80.0 | 30 | > th | dose dependent | sin | 5 | NA |
| 641 | 22.33 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 670 | 22.35 | temperature | 20.0 | 10 | > th | dose independent | rect. | 3 | 3 |
| 703 | 22.36 | humidity | 90.0 | 30 | > th | dose independent | rect. | 1 | 15 |
| 719 | 22.37 | wind | 1.0 | 270 | > th | dose independent | rect. | 10 | 8 |
| 721 | 22.37 | humidity | 90.0 | 30 | > th | dose independent | rect. | 1 | 13 |
| 725 | 22.37 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 732 | 22.37 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 11 | 12 |
| 739 | 22.38 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 8 |
| 746 | 22.38 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 11 | 18 |
| 756 | 22.39 | radiation | 10.0 | 270 | < th | dose independent | rect. | 23 | 7 |
| 757 | 22.39 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 22 | 8 |
| 759 | 22.39 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 773 | 22.39 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 11 | 18 |
| 783 | 22.40 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 16 |
| 787 | 22.40 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 16 |
| 788 | 22.41 | wind | 7.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 799 | 22.41 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 12 | 4 |
| 839 | 22.43 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 17 |
| 845 | 22.43 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 23 | 7 |
| 862 | 22.45 | wind | 1.0 | 270 | > th | dose independent | rect. | 18 | 16 |
| 867 | 22.45 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 20 | NA |
| 869 | 22.45 | radiation | 1.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 881 | 22.45 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 17 | 13 |
| 883 | 22.46 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 888 | 22.46 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 8 |
| 890 | 22.46 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 24 | 16 |
| 892 | 22.46 | wind | 1.0 | 270 | > th | dose independent | rect. | 17 | 18 |
| 895 | 22.46 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 900 | 22.46 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 8 |
| 918 | 22.47 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 14 | 8 |
| 922 | 22.48 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 925 | 22.48 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 10 | 5 |
| 929 | 22.48 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 20 |
| 951 | 22.49 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 992 | 22.50 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 6 |
| 996 | 22.50 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 17 | 16 |