BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0103300 Os04g0103300|AK073274
         (318 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0103300  Conserved hypothetical protein                      447   e-126
Os07g0655400  Conserved hypothetical protein                      207   7e-54

>Os04g0103300 Conserved hypothetical protein
          Length = 318

 Score =  447 bits (1150), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 234/318 (73%), Positives = 234/318 (73%)

Query: 1   MMESQALQDXXXXXXXXXXXXXXXXXXXXXXKEFTRTCKXXXXXXXXXXXXXXXXXXXXX 60
           MMESQALQD                      KEFTRTCK                     
Sbjct: 1   MMESQALQDPVAEPHGAEPAAAGAPPAVVPGKEFTRTCKGLVVVLVGGYVLLQLLPSSLD 60

Query: 61  XXAIIPAKTIPFVWTVFTAGYIEQVLPGAIGSSLGLLFCGKDIEPVWGRKEFLKFIILVN 120
             AIIPAKTIPFVWTVFTAGYIEQVLPGAIGSSLGLLFCGKDIEPVWGRKEFLKFIILVN
Sbjct: 61  YLAIIPAKTIPFVWTVFTAGYIEQVLPGAIGSSLGLLFCGKDIEPVWGRKEFLKFIILVN 120

Query: 121 SICGVLAFCFAVALYYVTGKESFLVTPLSGFHGALAGFLVGLKQLLPNLELPMCFFWKIK 180
           SICGVLAFCFAVALYYVTGKESFLVTPLSGFHGALAGFLVGLKQLLPNLELPMCFFWKIK
Sbjct: 121 SICGVLAFCFAVALYYVTGKESFLVTPLSGFHGALAGFLVGLKQLLPNLELPMCFFWKIK 180

Query: 181 AKWMPFFVLCFSTIMAFIVPDSINFLPTLLSGMYVSWIYLRYFQRNPLTGLKGXXXXXXX 240
           AKWMPFFVLCFSTIMAFIVPDSINFLPTLLSGMYVSWIYLRYFQRNPLTGLKG       
Sbjct: 181 AKWMPFFVLCFSTIMAFIVPDSINFLPTLLSGMYVSWIYLRYFQRNPLTGLKGDSSDDFS 240

Query: 241 XXXXXXXAMRPVTDPVANLFDRMLCARSRPSELALPVSDPAKASXXXXXXXXXXXXXLXX 300
                  AMRPVTDPVANLFDRMLCARSRPSELALPVSDPAKAS             L  
Sbjct: 241 FPSLFPDAMRPVTDPVANLFDRMLCARSRPSELALPVSDPAKASRRRERGERVLEERLAA 300

Query: 301 XXXXXXXXXXLGHSTAED 318
                     LGHSTAED
Sbjct: 301 DHAADTEAPALGHSTAED 318



>Os07g0655400 Conserved hypothetical protein
          Length = 316

 Score =  207 bits (527), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 107/230 (46%), Positives = 144/230 (62%), Gaps = 9/230 (3%)

Query: 63  AIIPAKTIPFVWTVFTAGYIEQVLPGAIGSSLGLLFCGKDIEPVWGRKEFLKFIILVNSI 122
           A++P +TIPF W + T GY+E  +PG I S +GLL  GK +EP+WG KE  KFI +VN  
Sbjct: 53  ALVPGRTIPFAWNLITGGYVELTIPGVIISIVGLLLFGKLLEPLWGSKELSKFIFVVNFS 112

Query: 123 CGVLAFCFAVALYYVTGKESFLVTPLSGFHGALAGFLVGLKQLLPNLELPMCFFWKIKAK 182
             +  F  A+ALYY T +ES+L  PLSGF+G L G LVG+KQL+   EL + F  KIKAK
Sbjct: 113 TSLCVFITAIALYYTTQEESYLYAPLSGFYGVLTGLLVGIKQLMSEQELNL-FVLKIKAK 171

Query: 183 WMPFFVLCFSTIMAFIVPDSINFLPTLLSGMYVSWIYLRYFQRNPLTGLKGXXXXXXXXX 242
           W+P  V   S I++F V + +++LP +L G+Y+SWIYLRYFQR   TGLKG         
Sbjct: 172 WIPSLVALISVIVSFFVKELVSYLPVILFGIYMSWIYLRYFQRRLETGLKGDPSEEFSFS 231

Query: 243 XXXXXAMRPVTDPVANLFDRMLCARSRPSELA--------LPVSDPAKAS 284
                 +RPV DP+A++F R+LC RS  ++          LP SD  +A+
Sbjct: 232 SFFPEFLRPVLDPIASIFHRLLCGRSERADARGQTLDTTPLPGSDSIEAN 281



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.328    0.142    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,571,370
Number of extensions: 266015
Number of successful extensions: 544
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 539
Number of HSP's successfully gapped: 2
Length of query: 318
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 217
Effective length of database: 11,762,187
Effective search space: 2552394579
Effective search space used: 2552394579
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 156 (64.7 bits)