BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0103300 Os04g0103300|AK073274
         (318 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07950.1  | chr3:2531982-2534277 FORWARD LENGTH=305            200   6e-52

>AT3G07950.1 | chr3:2531982-2534277 FORWARD LENGTH=305
          Length = 304

 Score =  200 bits (509), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 107/231 (46%), Positives = 140/231 (60%), Gaps = 12/231 (5%)

Query: 63  AIIPAKTIPFVWTVFTAGYIEQVLPGAIGSSLGLLFCGKDIEPVWGRKEFLKFIILVNSI 122
           A+IPA+TIPF W + T+GY E  + G + S++ LLF GK +EPVWG  EFLKFI +VN +
Sbjct: 41  ALIPARTIPFAWNLITSGYFELSVYGVVFSTVSLLFMGKFLEPVWGSTEFLKFIFVVNFL 100

Query: 123 CGVLAFCFAVALYYVTGKESFLVTPLSGFHGALAGFLVGLKQLLPNLELPMCFFWKIKAK 182
             +  F  A+ALYY+T  E +L  P +GFHG LAG LVG+KQ++P+ E+      KIKAK
Sbjct: 101 TYLCVFVTAIALYYITRLEVYLYMPFAGFHGVLAGLLVGIKQIIPDQEI---LLLKIKAK 157

Query: 183 WMPFFVLCFSTIMAFIVPDSINFLPTLLSGMYVSWIYLRYFQRNPLTGLKGXXXXXXXXX 242
           W+P  +L  S   +F   DS  +LPTL+ G Y+ W+YLRY QR P T L+G         
Sbjct: 158 WLPSIMLILSIASSFFTLDSAAYLPTLIFGTYMGWLYLRYLQRRPETKLRGDPSDDFAFS 217

Query: 243 XXXXXAMRPVTDPVANLFDRMLCARSRP---------SELALPVSDPAKAS 284
                 +RPV DP+A +F RMLC RS           S   LP SD A+AS
Sbjct: 218 TFFPELLRPVIDPIALIFHRMLCGRSNATSEDHDYSTSGAPLPGSDSAEAS 268



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.328    0.142    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,978,035
Number of extensions: 181246
Number of successful extensions: 422
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 420
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 219
Effective length of database: 8,392,385
Effective search space: 1837932315
Effective search space used: 1837932315
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 112 (47.8 bits)