BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0642600 Os07g0642600|AK121167
(450 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0642600 RNA polymerase II transcription factor SIII su... 703 0.0
Os08g0511500 Conserved hypothetical protein 107 1e-23
Os03g0364700 Transcription factors TFIIS, elongin A, CRSP70... 70 4e-12
Os01g0282100 68 2e-11
>Os07g0642600 RNA polymerase II transcription factor SIII subunit A family
protein
Length = 450
Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/432 (81%), Positives = 354/432 (81%)
Query: 1 MAPPSMDYWLGFFRGXXXXXXXXXXXXXXXXXXXXXXXLRSRRDAIAERLYTAHLVXXXX 60
MAPPSMDYWLGFFRG LRSRRDAIAERLYTAHLV
Sbjct: 1 MAPPSMDYWLGFFRGAGDSIFDAIDAAIAVAASDHPAALRSRRDAIAERLYTAHLVPGAP 60
Query: 61 XXXXXXXXXXXXXXXXTAQLLLHPEGAASVPSLCSSDRAEVITDDGAVPRRDDDPVAAET 120
TAQLLLHPEGAASVPSLCSSDRAEVITDDGAVPRRDDDPVAAET
Sbjct: 61 PAGPPAGGGAAAADAPTAQLLLHPEGAASVPSLCSSDRAEVITDDGAVPRRDDDPVAAET 120
Query: 121 ERIKAILLNDQEKSEATXXXXXXXXXXXXXXXXXXXXXXIGKAVSSYRKHNSKQIRHLVR 180
ERIKAILLNDQEKSEAT IGKAVSSYRKHNSKQIRHLVR
Sbjct: 121 ERIKAILLNDQEKSEATLLELLRRLQQLELTVDTLTVTEIGKAVSSYRKHNSKQIRHLVR 180
Query: 181 LLIEGWKRIVDEWMSSRDAIVDHTPQSMHPSGLEQDERGLSSPSMDEGALFATPSTSIRL 240
LLIEGWKRIVDEWMSSRDAIVDHTPQSMHPSGLEQDERGLSSPSMDEGALFATPSTSIRL
Sbjct: 181 LLIEGWKRIVDEWMSSRDAIVDHTPQSMHPSGLEQDERGLSSPSMDEGALFATPSTSIRL 240
Query: 241 SEENQGSKFFDGMDDDGNTRSNGGRDNGRLYTRNQEPARRPLPPMAQQYDPDQSWKQEQS 300
SEENQGSKFFDGMDDDGNTRSNGGRDNGRLYTRNQEPARRPLPPMAQQYDPDQSWKQEQS
Sbjct: 241 SEENQGSKFFDGMDDDGNTRSNGGRDNGRLYTRNQEPARRPLPPMAQQYDPDQSWKQEQS 300
Query: 301 AMRQSRPQELSNGQTREQFIAAMLARPSNPESGPGRPQPRTKQHQDASPAQGRSQPMPSD 360
AMRQSRPQELSNGQTREQFIAAMLARPSNPESGPGRPQPRTKQHQDASPAQGRSQPMPSD
Sbjct: 301 AMRQSRPQELSNGQTREQFIAAMLARPSNPESGPGRPQPRTKQHQDASPAQGRSQPMPSD 360
Query: 361 KSASHHDENSVRXXXXXXXXXXXXXTNSAKLEVTKRKLQEGYQEFDNAKKQRTIQMVDPQ 420
KSASHHDENSVR TNSAKLEVTKRKLQEGYQEFDNAKKQRTIQMVDPQ
Sbjct: 361 KSASHHDENSVRAKLELAKNAKLELTNSAKLEVTKRKLQEGYQEFDNAKKQRTIQMVDPQ 420
Query: 421 NLPKQANRNWQP 432
NLPKQANRNWQP
Sbjct: 421 NLPKQANRNWQP 432
>Os08g0511500 Conserved hypothetical protein
Length = 112
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 71/128 (55%), Gaps = 33/128 (25%)
Query: 6 MDYWLGFFRGXXXXXXXXXXXXXXXXXXXXXXXLRSRRDAIAERLYTAHLVXXXXXXXXX 65
MDYWLGFFRG LRSRRDA A+RLY
Sbjct: 1 MDYWLGFFRGAGDNIFDAIAVAASDHPAA----LRSRRDAFAQRLY-------------- 42
Query: 66 XXXXXXXXXXXTAQLLLHPEGAASVPSLCSSDRAEVITDDGAVPRRDDDPVAAETERIKA 125
+LLHPEGAAS+PS+CSSDRA+VI DDG VP R +DPVAAETERIK
Sbjct: 43 --------------MLLHPEGAASIPSICSSDRADVIADDGGVPCR-EDPVAAETERIKD 87
Query: 126 ILLNDQEK 133
+LLNDQE+
Sbjct: 88 VLLNDQER 95
>Os03g0364700 Transcription factors TFIIS, elongin A, CRSP70, conserved domain
containing protein
Length = 274
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 55/112 (49%), Gaps = 8/112 (7%)
Query: 81 LLHPEGAASVPSLCSSDRAEVITD-------DGAVPRRD-DDPVAAETERIKAILLNDQE 132
LL P+ A VPSLCSSDRAE + PR D D VAAE R+KA L N QE
Sbjct: 163 LLLPDAARGVPSLCSSDRAEAVVTDDDDGAAAAVAPRGDCHDRVAAEAFRVKAALSNAQE 222
Query: 133 KSEATXXXXXXXXXXXXXXXXXXXXXXIGKAVSSYRKHNSKQIRHLVRLLIE 184
K+EA IG AV RKH SKQIR LVR LIE
Sbjct: 223 KTEAELLELLRALQQLEFTVDAIRVTEIGTAVKPLRKHGSKQIRQLVRSLIE 274
>Os01g0282100
Length = 390
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/302 (23%), Positives = 112/302 (37%), Gaps = 39/302 (12%)
Query: 112 DDDPVAAETERIKAILLNDQEKSEATXXXXXXXXXXXXXXXXXXXXXXIGKAVSSYRKHN 171
+D V E RIK IL+N +E+S T I +AV+ KH
Sbjct: 123 EDTQVINEVLRIKDILINYKEQSVDTLFDGLRRLQLMRLSISVLKSTQIAEAVAPLNKHR 182
Query: 172 SKQIRHLVRLLIEGWKRIVDEWMSSRDAIVDHTPQSMHPSGLEQDERGLSSPSMDEGALF 231
S I + R L +GWK + +W+ A D +P +PS +E D+ GL +P MD GA F
Sbjct: 183 SPVICKIARDLAKGWKGVAADWVGPSSANADTSPDISNPSTVE-DDFGLPTPPMDVGAFF 241
Query: 232 ATPSTSIRLSEENQGSKFFDGMDDDGNTRSNGGRDNGRLYTRNQEPARRPLPPMAQQYDP 291
S + E S+F DDD + N + + +P+ M
Sbjct: 242 LPQSAA-----EQYVSEFLHKADDDDDESLIPNAKNDCGFGGYKMEIAKPVANM------ 290
Query: 292 DQSWKQEQSAMRQSRPQELSNGQTREQFIAAMLARPSNPESGPGRPQPRTKQHQDASPAQ 351
+++ +R+ + L+R P Q + QH + +
Sbjct: 291 ------DENILRKGKD----------------LSRQHGPPMRQANLQMKLAQHHAIAITE 328
Query: 352 GR-----SQPMPSDKSASHHDENSVRXXXXXXXXXXXXXTNSAKLEVTKRKLQEGYQEFD 406
R +P+P S + +LE TKRKL + YQE +
Sbjct: 329 QRPIAVVRKPLPDHVSKLERQATILEGCKVGIGKRNNTDIADLRLEATKRKLNDAYQEAE 388
Query: 407 NA 408
N+
Sbjct: 389 NS 390
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.127 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,868,062
Number of extensions: 585604
Number of successful extensions: 2101
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2097
Number of HSP's successfully gapped: 4
Length of query: 450
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 346
Effective length of database: 11,605,545
Effective search space: 4015518570
Effective search space used: 4015518570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)