Os07g0642600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA polymerase II transcription factor SIII subunit A family protein.
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Os07g0642600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA polymerase II transcription factor SIII subunit A family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.77 | 0.293 | 12.5 | -0.0271 | 1.33 | 1.06 | 0.352 | -2.41 | -0.053 | 6 | 29.55 | 409 | -- | -- |
| 40.71 | 0.297 | 12.5 | -0.13 | 1.37 | 0.95 | 0.18 | -- | -0.0721 | 5.99 | 29.5 | 409 | -- | -- |
| 38.72 | 0.29 | 12.5 | -0.118 | 1.3 | 0.975 | -- | -1.37 | -0.026 | 6.03 | 29.35 | 411 | -- | -- |
| 38.93 | 0.291 | 12.5 | -0.227 | 1.27 | 0.858 | -- | -- | -0.0198 | 6.01 | 28.99 | 438 | -- | -- |
| 81.99 | 0.422 | 12.5 | 0.101 | -- | 1.73 | -- | -1.06 | 0.183 | -- | 28.22 | 455 | -- | -- |
| 54.19 | 0.345 | 12.5 | -0.414 | 1.72 | -- | 0.615 | -- | -0.114 | 5.89 | -- | -- | -- | -- |
| 55.12 | 0.348 | 12.5 | -0.409 | 1.72 | -- | -- | -- | -0.116 | 5.91 | -- | -- | -- | -- |
| 82.36 | 0.423 | 12.5 | -0.0551 | -- | 1.67 | -- | -- | 0.14 | -- | 28.2 | 455 | -- | -- |
| 40.32 | 0.296 | 12.5 | -- | 1.23 | 0.854 | -- | -- | 0.00413 | 6.08 | 28.58 | 427 | -- | -- |
| 209.04 | 0.676 | 12.6 | -0.357 | -- | -- | -- | -- | -0.0762 | -- | -- | -- | -- | -- |
| 59.52 | 0.361 | 12.5 | -- | 1.72 | -- | -- | -- | -0.0705 | 5.92 | -- | -- | -- | -- |
| 82.45 | 0.423 | 12.5 | -- | -- | 1.68 | -- | -- | 0.148 | -- | 28.21 | 455 | -- | -- |
| 212.4 | 0.68 | 12.6 | -- | -- | -- | -- | -- | -0.0366 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.91 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 13 |
| 6 | 36.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 14 |
| 13 | 36.34 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 14 | 36.43 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 21 |
| 21 | 36.59 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 14 |
| 34 | 37.04 | temperature | 10 | 270 | > th | dose dependent | sin | 22 | NA |
| 40 | 37.15 | temperature | 30 | 270 | < th | dose independent | rect. | 16 | 21 |
| 65 | 37.45 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 19 |
| 87 | 37.69 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 5 |
| 88 | 37.69 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 7 |
| 100 | 37.76 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 13 |
| 155 | 38.22 | temperature | 30 | 270 | < th | dose dependent | sin | 22 | NA |
| 237 | 38.63 | temperature | 20 | 30 | > th | dose dependent | rect. | 3 | 17 |
| 332 | 39.01 | temperature | 20 | 10 | > th | dose dependent | rect. | 14 | 6 |
| 362 | 39.09 | temperature | 15 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 463 | 39.36 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 468 | 39.36 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 576 | 39.57 | temperature | 25 | 270 | > th | dose dependent | rect. | 11 | 15 |
| 758 | 40.03 | radiation | 20 | 270 | > th | dose independent | rect. | 13 | 19 |
| 792 | 40.07 | temperature | 10 | 720 | > th | dose dependent | sin | 3 | NA |
| 827 | 40.13 | radiation | 40 | 270 | < th | dose dependent | sin | 14 | NA |
| 906 | 40.32 | wind | 3 | 270 | > th | dose independent | rect. | 13 | 3 |
| 910 | 40.32 | radiation | 1 | 270 | > th | dose dependent | rect. | 13 | 19 |
| 938 | 40.37 | temperature | 25 | 10 | > th | dose independent | rect. | 14 | 6 |
| 953 | 40.39 | radiation | 1 | 270 | > th | dose dependent | sin | 14 | NA |