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Os03g0364700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transcription factors TFIIS, elongin A, CRSP70, conserved domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.0353) R2 : 0.456
β1 : -1.47 (0.129) R2dD : 0.159 R2D : 0.193
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.3 (0.0933) R2dE : 0.234 R2E : 0.242
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.335 (0.0754) R2dN8 : 0.0316 R2N8 : 0.0466
σ : 0.661
deviance : 201.2
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 1.21e-05
memory length : 559
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
186.15 0.641 10.6 -1.56 1.44 1.26 0.242 -0.254 0.353 8.8 3.428 30 -- --
186.3 0.636 10.6 -1.58 1.45 1.26 0.522 -- 0.358 8.79 3.839 26 -- --
186.26 0.636 10.6 -1.54 1.42 1.24 -- -0.343 0.358 8.74 3.409 29 -- --
187.16 0.637 10.6 -1.56 1.43 1.26 -- -- 0.355 8.8 3.586 29 -- --
202.18 0.662 10.6 -1.51 -- 1.21 -- 0.138 0.364 -- 0.02037 545 -- --
217.44 0.691 10.6 -1.6 1.14 -- 0.0226 -- 0.285 4.22 -- -- -- --
217.44 0.691 10.6 -1.6 1.14 -- -- -- 0.285 4.22 -- -- -- --
201.2 0.661 10.6 -1.47 -- 1.3 -- -- 0.335 -- 1.21e-05 559 -- --
247.13 0.732 10.5 -- 1.5 1.39 -- -- 0.489 9.31 0.7929 49 -- --
287.55 0.792 10.6 -1.55 -- -- -- -- 0.315 -- -- -- -- --
284.64 0.789 10.6 -- 1.11 -- -- -- 0.463 4.24 -- -- -- --
257.95 0.748 10.6 -- -- 1.34 -- -- 0.536 -- 0.01 557 -- --
351.01 0.874 10.6 -- -- -- -- -- 0.487 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 178.29 radiation 1.0 90 < th dose dependent rect. 21 23
2 180.92 radiation 1.0 90 < th dose independent rect. 21 23
3 181.62 temperature 20.0 30 > th dose independent rect. 5 21
5 182.48 temperature 10.0 30 > th dose dependent rect. 5 21
19 184.12 wind 3.0 43200 > th dose independent rect. 15 1
20 184.27 wind 1.0 14400 > th dose independent rect. 23 2
21 184.31 wind 3.0 43200 < th dose independent rect. 15 1
22 184.37 radiation 10.0 4320 < th dose dependent rect. 2 3
23 184.45 radiation 1.0 30 < th dose dependent sin 2 NA
27 184.69 wind 1.0 43200 < th dose dependent rect. 8 16
29 184.87 wind 1.0 43200 > th dose independent rect. 8 18
31 184.92 wind 5.0 43200 < th dose dependent rect. 15 1
32 184.93 wind 1.0 43200 < th dose independent rect. 11 15
37 185.02 wind 1.0 43200 < th dose independent rect. 10 3
38 185.06 radiation 10.0 10 < th dose dependent sin 8 NA
41 185.14 wind 1.0 43200 > th dose independent rect. 11 15
47 185.24 wind 1.0 43200 < th dose independent rect. 8 18
48 185.25 wind 1.0 43200 > th dose independent rect. 10 3
51 185.35 wind 1.0 43200 < th dose dependent sin 19 NA
64 185.60 radiation 1.0 30 > th dose independent sin 3 NA
68 185.71 wind 1.0 43200 > th dose independent rect. 14 12
92 186.02 wind 1.0 43200 < th dose independent sin 17 NA
95 186.13 radiation 1.0 30 < th dose dependent rect. 1 19
109 186.29 radiation 40.0 14400 < th dose dependent rect. 3 2
114 186.42 radiation 1.0 30 < th dose independent sin 3 NA
115 186.44 wind 1.0 43200 > th dose independent sin 17 NA
127 186.52 wind 1.0 43200 < th dose dependent rect. 10 3
140 186.75 humidity 60.0 43200 < th dose independent rect. 9 1
148 186.85 wind 1.0 43200 < th dose dependent rect. 10 1
169 187.01 radiation 10.0 10 < th dose dependent rect. 18 23
189 187.19 radiation 1.0 30 < th dose independent rect. 18 23
192 187.20 humidity 50.0 30 > th dose dependent rect. 11 18
193 187.21 humidity 80.0 43200 < th dose independent rect. 3 9
217 187.43 radiation 1.0 30 < th dose independent rect. 1 19
218 187.44 humidity 60.0 43200 > th dose independent rect. 8 2
234 187.56 temperature 10.0 90 > th dose dependent rect. 20 13
247 187.67 temperature 20.0 30 > th dose independent rect. 5 13
248 187.67 radiation 1.0 30 < th dose dependent no NA NA
249 187.67 radiation 1.0 30 < th dose dependent rect. 11 21
255 187.67 radiation 1.0 30 < th dose dependent rect. 13 23
256 187.67 radiation 1.0 30 < th dose dependent rect. 15 23
258 187.69 radiation 1.0 30 > th dose independent rect. 5 13
276 187.76 radiation 1.0 30 < th dose dependent rect. 7 23
305 188.01 temperature 15.0 10 > th dose dependent rect. 20 14
313 188.06 humidity 50.0 43200 < th dose independent rect. 13 2
316 188.07 humidity 70.0 43200 > th dose independent rect. 22 18
327 188.14 radiation 1.0 30 < th dose dependent rect. 13 19
349 188.24 humidity 50.0 43200 > th dose independent rect. 11 2
352 188.26 humidity 50.0 43200 > th dose independent rect. 11 4
364 188.32 humidity 80.0 43200 > th dose independent rect. 3 8
367 188.34 wind 1.0 14400 < th dose independent rect. 22 3
368 188.35 humidity 80.0 43200 < th dose independent sin 5 NA
382 188.43 temperature 20.0 90 > th dose independent rect. 20 14
389 188.47 humidity 80.0 43200 > th dose independent rect. 4 6
400 188.51 radiation 1.0 30 < th dose independent rect. 7 23
401 188.52 radiation 1.0 30 < th dose independent no NA NA
406 188.52 radiation 1.0 30 < th dose independent rect. 11 21
412 188.52 radiation 1.0 30 < th dose independent rect. 13 23
413 188.52 radiation 1.0 30 < th dose independent rect. 15 23
419 188.54 radiation 1.0 30 > th dose independent no NA NA
562 188.97 radiation 1.0 30 < th dose independent rect. 13 19
570 188.97 radiation 1.0 30 < th dose dependent rect. 15 21
586 189.02 humidity 70.0 43200 > th dose independent rect. 10 20
587 189.02 radiation 1.0 30 < th dose independent rect. 18 20
619 189.15 radiation 1.0 4320 < th dose independent rect. 3 2
623 189.16 humidity 80.0 43200 < th dose independent rect. 18 19
669 189.33 radiation 10.0 43200 > th dose independent rect. 10 1
674 189.34 humidity 50.0 43200 > th dose independent rect. 2 13
692 189.38 radiation 1.0 30 > th dose independent rect. 15 23
704 189.41 radiation 1.0 30 < th dose dependent rect. 15 17
711 189.41 radiation 10.0 10 < th dose dependent rect. 18 20
756 189.56 radiation 1.0 14400 < th dose independent rect. 18 11
758 189.57 humidity 80.0 43200 > th dose independent sin 6 NA
826 189.69 radiation 1.0 43200 < th dose dependent rect. 2 3
839 189.70 radiation 1.0 43200 < th dose dependent rect. 19 10
849 189.73 radiation 1.0 30 < th dose independent rect. 15 21
853 189.73 radiation 1.0 43200 < th dose dependent rect. 24 5
864 189.75 humidity 50.0 43200 > th dose dependent rect. 24 13
877 189.79 precipitation 0.1 43200 < th dose independent rect. 23 1
879 189.79 humidity 70.0 43200 < th dose independent rect. 11 19
882 189.79 precipitation 0.1 43200 < th dose dependent rect. 23 1
928 189.88 humidity 60.0 14400 < th dose dependent rect. 18 16
935 189.90 precipitation 0.1 43200 > th dose independent rect. 23 1
937 189.90 humidity 80.0 43200 > th dose independent rect. 15 19
941 189.90 precipitation 0.1 43200 > th dose dependent rect. 23 1
961 189.94 radiation 1.0 30 < th dose independent rect. 18 18
970 189.95 humidity 80.0 43200 < th dose independent rect. 15 19
971 189.95 humidity 50.0 43200 > th dose dependent rect. 20 17
980 189.97 wind 1.0 43200 > th dose dependent rect. 15 1
987 189.99 temperature 30.0 30 < th dose dependent rect. 12 17
995 190.00 humidity 50.0 43200 > th dose dependent sin 6 NA