BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0641000 Os07g0641000|AK100810
         (288 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0641000  Conserved hypothetical protein                      600   e-172
Os03g0366700  Conserved hypothetical protein                      123   2e-28

>Os07g0641000 Conserved hypothetical protein
          Length = 288

 Score =  600 bits (1547), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 288/288 (100%), Positives = 288/288 (100%)

Query: 1   MPSRLCLNSVHNTRGIINQSDATSNKSGRWETSSCAMESLYDIDLISRTVPVVLDNPQSW 60
           MPSRLCLNSVHNTRGIINQSDATSNKSGRWETSSCAMESLYDIDLISRTVPVVLDNPQSW
Sbjct: 1   MPSRLCLNSVHNTRGIINQSDATSNKSGRWETSSCAMESLYDIDLISRTVPVVLDNPQSW 60

Query: 61  YAIVSRSTKLGEEGDVAHAQGVSRQELKENTLYSKAFLINRTASPLAWFMECKDRTKRSS 120
           YAIVSRSTKLGEEGDVAHAQGVSRQELKENTLYSKAFLINRTASPLAWFMECKDRTKRSS
Sbjct: 61  YAIVSRSTKLGEEGDVAHAQGVSRQELKENTLYSKAFLINRTASPLAWFMECKDRTKRSS 120

Query: 121 VMLPYNFLPSMPARKLRDAANKIKVILGDYDAIHVRRGDLLKNRKDRFGVERSLHPHLDR 180
           VMLPYNFLPSMPARKLRDAANKIKVILGDYDAIHVRRGDLLKNRKDRFGVERSLHPHLDR
Sbjct: 121 VMLPYNFLPSMPARKLRDAANKIKVILGDYDAIHVRRGDLLKNRKDRFGVERSLHPHLDR 180

Query: 181 DTHPENIKRRIAKWIPRGRTLFIASNERTPGFFSPLSDRYKLAYSSNFSSILEPVIDNNY 240
           DTHPENIKRRIAKWIPRGRTLFIASNERTPGFFSPLSDRYKLAYSSNFSSILEPVIDNNY
Sbjct: 181 DTHPENIKRRIAKWIPRGRTLFIASNERTPGFFSPLSDRYKLAYSSNFSSILEPVIDNNY 240

Query: 241 QLFMVERLIMQGARKFVKTMKEFDNDLSLCDDPKKNTKVWEEAVYTDG 288
           QLFMVERLIMQGARKFVKTMKEFDNDLSLCDDPKKNTKVWEEAVYTDG
Sbjct: 241 QLFMVERLIMQGARKFVKTMKEFDNDLSLCDDPKKNTKVWEEAVYTDG 288



>Os03g0366700 Conserved hypothetical protein
          Length = 74

 Score =  123 bits (308), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 57/66 (86%), Positives = 63/66 (95%)

Query: 219 RYKLAYSSNFSSILEPVIDNNYQLFMVERLIMQGARKFVKTMKEFDNDLSLCDDPKKNTK 278
           RYKLAYSSNFSSILEPVI+NNYQLFMVERL+M+GA+ FVKTMKEFDNDL+LCDDPKKNTK
Sbjct: 9   RYKLAYSSNFSSILEPVIENNYQLFMVERLMMRGAKTFVKTMKEFDNDLTLCDDPKKNTK 68

Query: 279 VWEEAV 284
           VW+  V
Sbjct: 69  VWQIPV 74



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,624,403
Number of extensions: 382016
Number of successful extensions: 776
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 776
Number of HSP's successfully gapped: 2
Length of query: 288
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 188
Effective length of database: 11,814,401
Effective search space: 2221107388
Effective search space used: 2221107388
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)