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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0641000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.78 (0.0297) R2 : 0.23
β1 : -1.17 (0.109) R2dD : 0.203 R2D : 0.217
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.151 (0.0634) R2dN8 : 0.0128 R2N8 : 0.027
σ : 0.557
deviance : 142.07
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
122.1 0.519 4.81 -1.43 0.302 0.805 0.0607 -1.59 0.16 20.4 80.52 1429 -- --
125.48 0.522 4.79 -1.27 0.304 0.703 0.0275 -- 0.171 19.7 83.24 1355 -- --
122.11 0.515 4.81 -1.43 0.302 0.812 -- -1.61 0.16 20.2 80.39 1408 -- --
125.48 0.522 4.79 -1.27 0.298 0.704 -- -- 0.172 19.6 83.17 1354 -- --
125.57 0.522 4.8 -1.28 -- 0.877 -- -0.631 0.132 -- 93.11 900 -- --
137.18 0.549 4.79 -1.17 0.293 -- 0.125 -- 0.153 20.7 -- -- -- --
137.22 0.549 4.79 -1.17 0.294 -- -- -- 0.153 20.6 -- -- -- --
126.12 0.523 4.79 -1.22 -- 0.81 -- -- 0.14 -- 93.03 878 -- --
164.48 0.597 4.76 -- 0.31 0.629 -- -- 0.267 19.4 94 1344 -- --
142.07 0.557 4.78 -1.17 -- -- -- -- 0.151 -- -- -- -- --
173.28 0.616 4.76 -- 0.298 -- -- -- 0.284 20.3 -- -- -- --
165.06 0.598 4.75 -- -- 0.739 -- -- 0.274 -- 94 867 -- --
178.22 0.623 4.75 -- -- -- -- -- 0.281 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 116.99 wind 5 14400 > th dose independent rect. 11 1
2 117.14 radiation 10 1440 < th dose dependent rect. 13 9
4 117.15 radiation 10 1440 < th dose dependent sin 16 NA
6 117.15 radiation 10 1440 < th dose dependent rect. 13 17
8 117.17 wind 5 14400 < th dose independent rect. 11 1
9 117.17 radiation 10 1440 < th dose dependent rect. 13 6
18 117.34 radiation 10 1440 < th dose dependent rect. 16 1
106 118.65 wind 5 43200 > th dose independent rect. 16 14
107 118.68 wind 5 43200 > th dose independent sin 13 NA
116 118.80 wind 5 43200 > th dose independent rect. 7 22
118 118.85 wind 5 43200 < th dose independent sin 13 NA
120 118.86 wind 5 43200 > th dose independent rect. 15 18
121 118.87 wind 5 43200 > th dose independent rect. 13 22
124 118.88 wind 5 43200 < th dose independent rect. 7 22
132 118.92 wind 5 43200 < th dose independent rect. 16 23
140 118.95 wind 5 43200 > th dose independent rect. 10 23
141 118.95 wind 5 43200 > th dose independent rect. 16 23
145 118.97 wind 5 43200 > th dose independent rect. 17 11
148 118.98 wind 5 43200 < th dose independent rect. 16 14
150 118.99 wind 5 43200 > th dose independent no NA NA
152 118.99 wind 5 43200 > th dose independent rect. 3 23
153 118.99 wind 5 43200 > th dose independent rect. 24 23
157 119.00 wind 5 43200 > th dose independent rect. 21 23
158 119.00 wind 5 43200 < th dose independent rect. 13 23
179 119.06 wind 5 43200 < th dose independent no NA NA
180 119.06 wind 5 43200 < th dose independent rect. 15 20
181 119.06 wind 5 43200 < th dose independent rect. 10 23
184 119.08 wind 5 43200 < th dose independent rect. 3 23
185 119.08 wind 5 43200 < th dose independent rect. 24 23
187 119.09 wind 5 43200 < th dose independent rect. 17 11
190 119.09 wind 5 43200 < th dose independent rect. 15 18
195 119.09 wind 5 43200 > th dose dependent rect. 15 15
209 119.11 wind 5 43200 < th dose independent rect. 21 23
221 119.14 wind 5 43200 > th dose dependent sin 14 NA
350 119.50 radiation 40 1440 < th dose dependent rect. 16 1
397 119.63 wind 5 43200 > th dose dependent rect. 17 9
414 119.68 wind 5 43200 > th dose dependent rect. 17 5
430 119.73 wind 7 43200 < th dose independent rect. 17 4
451 119.80 wind 7 43200 > th dose independent rect. 17 4
459 119.82 wind 7 43200 < th dose independent rect. 15 8
486 119.89 radiation 1 1440 > th dose dependent rect. 16 1
488 119.90 wind 7 43200 > th dose independent rect. 15 8
532 120.01 wind 5 43200 > th dose independent sin 1 NA
539 120.04 wind 5 43200 < th dose independent sin 1 NA
579 120.11 humidity 70 1440 > th dose independent rect. 17 19
619 120.22 wind 5 43200 > th dose dependent rect. 8 21
639 120.26 radiation 1 270 < th dose dependent rect. 5 13
653 120.28 humidity 50 1440 > th dose dependent rect. 16 2
676 120.32 humidity 90 1440 < th dose dependent rect. 16 1
690 120.34 wind 5 43200 > th dose dependent rect. 1 22
723 120.37 wind 5 43200 > th dose dependent rect. 3 20
759 120.41 wind 5 43200 > th dose dependent rect. 3 23
760 120.42 wind 5 43200 > th dose dependent no NA NA
792 120.46 wind 5 43200 > th dose dependent rect. 7 16
841 120.53 humidity 70 1440 < th dose independent rect. 17 19
852 120.54 wind 3 14400 > th dose dependent rect. 11 1
875 120.57 atmosphere 995 43200 < th dose dependent rect. 15 9
885 120.58 wind 5 43200 > th dose dependent rect. 21 23
921 120.64 radiation 40 1440 < th dose dependent rect. 16 7
927 120.66 wind 5 43200 < th dose independent rect. 7 9
929 120.66 radiation 1 1440 < th dose independent rect. 15 14
936 120.67 radiation 1 1440 < th dose independent rect. 15 7
943 120.68 wind 5 43200 > th dose independent rect. 19 2
971 120.71 radiation 1 1440 < th dose independent rect. 15 4
989 120.73 wind 5 43200 > th dose independent rect. 7 9
996 120.73 wind 5 43200 < th dose dependent rect. 9 2