BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0638000 Os07g0638000|AK060298
         (353 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0638000  Conserved hypothetical protein                      670   0.0  
Os12g0590500  Similar to Kinesin-like polypeptides 8 (Fragment)   167   8e-42

>Os07g0638000 Conserved hypothetical protein
          Length = 353

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/353 (94%), Positives = 332/353 (94%)

Query: 1   MFIVDSTSKCDATEQLCPGRCQLEKRLKAEIIAHQDARRKIECLTMEASCKDEEVRQYKE 60
           MFIVDSTSKCDATEQLCPGRCQLEKRLKAEIIAHQDARRKIECLTMEASCKDEEVRQYKE
Sbjct: 1   MFIVDSTSKCDATEQLCPGRCQLEKRLKAEIIAHQDARRKIECLTMEASCKDEEVRQYKE 60

Query: 61  HIAELVLHSEAQSLLFQEKYQEMEHMISKQKFGLHESNSDTGHTKFEKPSGRTRGSGSPF 120
           HIAELVLHSEAQSLLFQEKYQEMEHMISKQKFGLHESNSDTGHTKFEKPSGRTRGSGSPF
Sbjct: 61  HIAELVLHSEAQSLLFQEKYQEMEHMISKQKFGLHESNSDTGHTKFEKPSGRTRGSGSPF 120

Query: 121 RCISSIVQQMNSEKDQEISVARQRIEELEGLVCNKQKEICMLTSRLAAVDSMTHDIIREL 180
           RCISSIVQQMNSEKDQEISVARQRIEELEGLVCNKQKEICMLTSRLAAVDSMTHDIIREL
Sbjct: 121 RCISSIVQQMNSEKDQEISVARQRIEELEGLVCNKQKEICMLTSRLAAVDSMTHDIIREL 180

Query: 181 LGVKLDMTNYANMLDQEELQKLLMASQQQIEQSKAKDVELDMLKEQFDHLIQERDSLFDD 240
           LGVKLDMTNYANMLDQEELQKLLMASQQQIEQSKAKDVELDMLKEQFDHLIQERDSLFDD
Sbjct: 181 LGVKLDMTNYANMLDQEELQKLLMASQQQIEQSKAKDVELDMLKEQFDHLIQERDSLFDD 240

Query: 241 MDQRKADXXXXXXXXXXXXXXXXXXXXXNGILQMEKDNLQQRIMEMDEEIQLLVGSNQAI 300
           MDQRKAD                     NGILQMEKDNLQQRIMEMDEEIQLLVGSNQAI
Sbjct: 241 MDQRKADLLESQLLIEQLEQREQMLEAQNGILQMEKDNLQQRIMEMDEEIQLLVGSNQAI 300

Query: 301 AETTFQMGSNHRSANSEFSRRLAQSDMLLSHARHEHSRLQAAKSSRTRRGSHQ 353
           AETTFQMGSNHRSANSEFSRRLAQSDMLLSHARHEHSRLQAAKSSRTRRGSHQ
Sbjct: 301 AETTFQMGSNHRSANSEFSRRLAQSDMLLSHARHEHSRLQAAKSSRTRRGSHQ 353



>Os12g0590500 Similar to Kinesin-like polypeptides 8 (Fragment)
          Length = 2815

 Score =  167 bits (424), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 107/326 (32%), Positives = 184/326 (56%), Gaps = 19/326 (5%)

Query: 25   KRLKAEIIAHQDARRKIECLTMEASCKDEEVRQYKEHIAELVLHSEAQSLLFQEKYQEME 84
            + +K E++A Q+    I  L  + + K+ E+ Q K HI+EL +H+EA +  +++K+ E+E
Sbjct: 2381 REIKNELLAAQE---NIRILQKDVAEKETEIAQCKAHISELNIHAEAAAREYKQKFMELE 2437

Query: 85   HMISKQKFGLHESNSDTGHTKFEKPSGRTRGSGSPFRCIS-SIVQQMNSEKDQEISVARQ 143
             M   Q+     ++++   T+ EK S + RGSGSPF+CI    VQQMNSEKD+E+S A+Q
Sbjct: 2438 AM--AQQVKSDNTSANACSTRPEKISLKPRGSGSPFKCIGLGFVQQMNSEKDEELSAAKQ 2495

Query: 144  RIEELEGLVCNKQKEICMLTSRLAAVDSMTHDIIRELLGVKLDMTNYANMLDQEELQKLL 203
            RI ELEG+  ++Q+EI ML +RLA  +SMTHD+IR++LGVK++M  +A ++D ++     
Sbjct: 2496 RIMELEGIAASRQREIFMLNARLATTESMTHDVIRDMLGVKMNMATWAALVDNQQQMDTQ 2555

Query: 204  MASQQQIEQSKAKDVELDMLKEQFDHLIQERDSLFDDMDQRKADXXXXXXXXXXXXXXXX 263
             ++  Q  +SK +  EL  L+ Q D LI+ER S  D+++QR+++                
Sbjct: 2556 ESAVTQAHESKEQSDELMKLRSQLDELIEERQSWLDEINQRQSELGAARITIEKLRQKEH 2615

Query: 264  XXXXXNGILQMEKDNLQQRIMEMDEEIQLLVGSNQAIAETTFQMGSNH-------RSANS 316
                   +L+ E  N +  I  +++E++ L        +   Q+  NH       +  N 
Sbjct: 2616 FMVAEIELLKAENANGKAIIFNLEDEVKKLT------RQQNLQLRINHHEENNLLKKQNE 2669

Query: 317  EFSRRLAQSDMLLSHARHEHSRLQAA 342
            E S +L +   +++  + E +R + +
Sbjct: 2670 ELSAKLQKLGAVVARTKEELARYRVS 2695



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.128    0.346 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,574,910
Number of extensions: 345385
Number of successful extensions: 1484
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1480
Number of HSP's successfully gapped: 2
Length of query: 353
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 251
Effective length of database: 11,709,973
Effective search space: 2939203223
Effective search space used: 2939203223
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)