Os07g0638000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0638000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 102.66 | 0.476 | 6.52 | 0.818 | 1.65 | -0.931 | 0.666 | 1.43 | 0.293 | 1.44 | 29.8 | 6189 | -- | -- |
| 103.08 | 0.473 | 6.51 | 1.11 | 1.6 | -0.808 | 0.707 | -- | 0.248 | 1.5 | 29.2 | 6243 | -- | -- |
| 104.3 | 0.476 | 6.54 | 0.679 | 1.66 | -1 | -- | 1.94 | 0.254 | 1.5 | 29.8 | 6244 | -- | -- |
| 104.94 | 0.477 | 6.51 | 1.09 | 1.62 | -0.803 | -- | -- | 0.246 | 1.52 | 29.2 | 6243 | -- | -- |
| 254.62 | 0.743 | 6.61 | 0.489 | -- | -1.12 | -- | 1.91 | -0.142 | -- | 33.1 | 11172 | -- | -- |
| 128.08 | 0.531 | 6.49 | 1.37 | 1.62 | -- | 0.831 | -- | 0.345 | 1.32 | -- | -- | -- | -- |
| 130.87 | 0.536 | 6.49 | 1.34 | 1.63 | -- | -- | -- | 0.34 | 1.38 | -- | -- | -- | -- |
| 240.65 | 0.723 | 6.52 | 1.06 | -- | -1.12 | -- | -- | 0.268 | -- | 26.1 | 2486 | -- | -- |
| 124 | 0.519 | 6.57 | -- | 1.55 | -0.726 | -- | -- | 0.0325 | 1.35 | 26.4 | 25101 | -- | -- |
| 293.46 | 0.8 | 6.47 | 1.41 | -- | -- | -- | -- | 0.374 | -- | -- | -- | -- | -- |
| 178.34 | 0.625 | 6.52 | -- | 1.65 | -- | -- | -- | 0.19 | 1.41 | -- | -- | -- | -- |
| 257.05 | 0.747 | 6.6 | -- | -- | -1.53 | -- | -- | -0.152 | -- | 25.87 | 2508 | -- | -- |
| 345.6 | 0.868 | 6.5 | -- | -- | -- | -- | -- | 0.218 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 94.13 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 18 |
| 2 | 94.27 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 20 |
| 22 | 97.89 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 4 | 17 |
| 26 | 98.42 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 10 |
| 28 | 98.62 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 2 | 11 |
| 31 | 98.71 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 37 | 98.90 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 13 |
| 73 | 99.73 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 6 | 8 |
| 84 | 99.94 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 5 | 5 |
| 85 | 99.95 | temperature | 30.0 | 90 | < th | dose independent | rect. | 7 | 20 |
| 91 | 100.01 | temperature | 30.0 | 90 | < th | dose independent | rect. | 9 | 18 |
| 101 | 100.21 | temperature | 20.0 | 720 | > th | dose dependent | sin | 5 | NA |
| 103 | 100.25 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 18 | 20 |
| 177 | 101.35 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 22 | 17 |
| 183 | 101.43 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 184 | 101.43 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 187 | 101.45 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 189 | 101.46 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 5 | 5 |
| 190 | 101.47 | temperature | 30.0 | 720 | < th | dose dependent | sin | 5 | NA |
| 213 | 101.61 | radiation | 10.0 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 292 | 102.02 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 359 | 102.20 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 8 | 6 |
| 363 | 102.22 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 416 | 102.44 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 440 | 102.52 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 8 | 5 |
| 449 | 102.54 | wind | 7.0 | 90 | < th | dose independent | rect. | 3 | 18 |
| 514 | 102.79 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 550 | 102.91 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 12 |
| 617 | 103.07 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 630 | 103.11 | radiation | 1.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 642 | 103.15 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 16 | 12 |
| 652 | 103.17 | temperature | 25.0 | 720 | < th | dose independent | rect. | 6 | 5 |
| 653 | 103.17 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 18 | 12 |
| 716 | 103.29 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 733 | 103.32 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 3 | 18 |
| 818 | 103.47 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 17 | 11 |
| 844 | 103.52 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 6 |
| 856 | 103.54 | radiation | 40.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 892 | 103.58 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 9 |
| 896 | 103.58 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 9 |
| 920 | 103.61 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 924 | 103.61 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 933 | 103.62 | temperature | 15.0 | 270 | > th | dose independent | rect. | 15 | 15 |
| 963 | 103.65 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 17 | 2 |