BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0634000 Os07g0634000|Os07g0634000
(425 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0634000 Conserved hypothetical protein 675 0.0
Os03g0374400 Conserved hypothetical protein 288 5e-78
Os07g0467600 Similar to Plus agglutinin 188 6e-48
>Os07g0634000 Conserved hypothetical protein
Length = 425
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/425 (80%), Positives = 344/425 (80%)
Query: 1 MTRASPFPLRIQATAASTARHRHDQASTPRARVLSLVTPPRRSDSTALAFLGFRCDTXXX 60
MTRASPFPLRIQATAASTARHRHDQASTPRARVLSLVTPPRRSDSTALAFLGFRCDT
Sbjct: 1 MTRASPFPLRIQATAASTARHRHDQASTPRARVLSLVTPPRRSDSTALAFLGFRCDTAAA 60
Query: 61 XXPGPXXXXXXXXXXXXXXXXXXHAGMDXXXXXXXXXXXXXXXXXXXXXXXXYRWSRAVA 120
PGP HAGMD YRWSRAVA
Sbjct: 61 AAPGPSGEERTGRRSGEEEEEEEHAGMDAPVAVAVPPQPQPQQPPAPAAAPPYRWSRAVA 120
Query: 121 RSPAAWMRXXXXXXXXXSIIFAFYEWGLPLLSEKVLLPIMRWEARSFGRHXXXXXXXXXX 180
RSPAAWMR SIIFAFYEWGLPLLSEKVLLPIMRWEARSFGRH
Sbjct: 121 RSPAAWMRLGVGGLLVGSIIFAFYEWGLPLLSEKVLLPIMRWEARSFGRHLLAIVLIASL 180
Query: 181 XXFPVVLLPSSPSMWLTXXXXXXXXXXXXXMVGTAIGMSIPYFIGSLFRERLHEWLEKKW 240
FPVVLLPSSPSMWLT MVGTAIGMSIPYFIGSLFRERLHEWLEKKW
Sbjct: 181 AIFPVVLLPSSPSMWLTGIIFGYGFGFLIIMVGTAIGMSIPYFIGSLFRERLHEWLEKKW 240
Query: 241 PREIALVKLASKGSWFKQFRVIVLLRISPFPYSMLNYTVTVTQIKYGPYICGSVVGMVPD 300
PREIALVKLASKGSWFKQFRVIVLLRISPFPYSMLNYTVTVTQIKYGPYICGSVVGMVPD
Sbjct: 241 PREIALVKLASKGSWFKQFRVIVLLRISPFPYSMLNYTVTVTQIKYGPYICGSVVGMVPD 300
Query: 301 ALVNIYSGRLILTLAGLKYHNHRLTTVEIVYNVISITVAFLVAIGFTVYAKRALDEMERS 360
ALVNIYSGRLILTLAGLKYHNHRLTTVEIVYNVISITVAFLVAIGFTVYAKRALDEMERS
Sbjct: 301 ALVNIYSGRLILTLAGLKYHNHRLTTVEIVYNVISITVAFLVAIGFTVYAKRALDEMERS 360
Query: 361 EGTCPEPAGIAHGSTELRAHHQECSNSSSVPIDVVYTVYSDDSLARHVLDLLPESLHGFG 420
EGTCPEPAGIAHGSTELRAHHQECSNSSSVPIDVVYTVYSDDSLARHVLDLLPESLHGFG
Sbjct: 361 EGTCPEPAGIAHGSTELRAHHQECSNSSSVPIDVVYTVYSDDSLARHVLDLLPESLHGFG 420
Query: 421 YNGEK 425
YNGEK
Sbjct: 421 YNGEK 425
>Os03g0374400 Conserved hypothetical protein
Length = 346
Score = 288 bits (737), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 140/270 (51%), Positives = 182/270 (67%), Gaps = 4/270 (1%)
Query: 126 WMRXXXXXXXXXSIIFAFYEWGLPLLSEKVLLPIMRWEARSFGRHXXXXXXXXXXXXFPV 185
WM+ + + F +WG+P EKVLLPIM+WEA +FGR FPV
Sbjct: 80 WMKVLLGCFLLILVSYVFVKWGVPFAFEKVLLPIMQWEASAFGRPVLAVVLVASLALFPV 139
Query: 186 VLLPSSPSMWLTXXXXXXXXXXXXXMVGTAIGMSIPYFIGSLFRERLHEWLEKKWPREIA 245
L+PS PSMWL MVGT IGM +PY+IGSLFRERLH WL K+WP++IA
Sbjct: 140 TLVPSGPSMWLAGMIFGYGWGFLIIMVGTTIGMVVPYWIGSLFRERLHAWL-KRWPQQIA 198
Query: 246 LVKLASKGSWFKQFRVIVLLRISPFPYSMLNYTVTVTQIKYGPYICGSVVGMVPDALVNI 305
L+KLA +G+WF+QFRV+ L RISPFPY++ NY VTVT+IK+ PY+CGS+ GM+P+A + I
Sbjct: 199 LIKLAGEGNWFQQFRVVALFRISPFPYTIFNYAVTVTEIKFNPYLCGSIAGMIPEAFIYI 258
Query: 306 YSGRLILTLAGLKYHNHRLTTVEIVYNVISITVAFLVAIGFTVYAKRALDEMERSEGTCP 365
YSGRLI TLA +KY N+++T VEI YN IS +A ++ + FTVYAKRAL++++ SEG
Sbjct: 259 YSGRLIRTLADMKYGNYKMTPVEITYNAISFVIAVVLTVAFTVYAKRALNDIKESEGILT 318
Query: 366 EPAGIAHGSTELRAHHQECSNSSSVPIDVV 395
E GI+ G + HQE S S VP+D V
Sbjct: 319 EEYGISTGH---KNPHQERSPSRPVPLDDV 345
>Os07g0467600 Similar to Plus agglutinin
Length = 288
Score = 188 bits (478), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 128/216 (59%), Gaps = 1/216 (0%)
Query: 149 PLLSEKVLLPIMRWEARSFGRHXXXXXXXXXXXXFPVVLLPSSPSMWLTXXXXXXXXXXX 208
PL+ +KV+ P++ WE+R+F R FP VLLPSSP MW+
Sbjct: 74 PLVIKKVIAPVIEWESRTFSRPVIALICFGAIAFFPSVLLPSSPFMWMAGMSFGYFYGFL 133
Query: 209 XXMVGTAIGMSIPYFIGSLFRERLHEWLEKKWPREIALVKLASKGSWFKQFRVIVLLRIS 268
+IGMS+P+FIGS F ++H WLEK WP++ A V+LA +G WF QFR + LLRIS
Sbjct: 134 IITAAMSIGMSLPFFIGSAFHSKIHRWLEK-WPKKAAFVRLAGEGDWFHQFRAVALLRIS 192
Query: 269 PFPYSMLNYTVTVTQIKYGPYICGSVVGMVPDALVNIYSGRLILTLAGLKYHNHRLTTVE 328
PFPY + NY T +KYGPYI GS+ G V + + IYSG+L+ +LA L+ +
Sbjct: 193 PFPYLVFNYASVATNVKYGPYIAGSMAGTVHETFLAIYSGKLLQSLAVATTQGSFLSVDQ 252
Query: 329 IVYNVISITVAFLVAIGFTVYAKRALDEMERSEGTC 364
I+YN + +VA + T+YAK+AL +++ + C
Sbjct: 253 IIYNGLGFSVAAVSTAAITIYAKKALQKLQADDELC 288
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.137 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,072,118
Number of extensions: 424809
Number of successful extensions: 1238
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1233
Number of HSP's successfully gapped: 3
Length of query: 425
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 321
Effective length of database: 11,605,545
Effective search space: 3725379945
Effective search space used: 3725379945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 157 (65.1 bits)