Os07g0634000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0634000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.1 | 0.436 | 2.2 | 5.24 | 0.156 | -72.5 | 0.336 | 443 | 0.0933 | 11.5 | 994.9 | 669 | -- | -- |
| 102.45 | 0.475 | 3.08 | -0.0491 | 0.135 | 0.22 | 0.241 | -- | 0.0823 | 10.4 | 994.9 | 669 | -- | -- |
| 86.3 | 0.433 | 2.23 | 5.06 | 0.201 | -73.1 | -- | 446 | 0.079 | 12.1 | 994.7 | 673 | -- | -- |
| 99.25 | 0.464 | 3.07 | -0.073 | 0.164 | 0.84 | -- | -- | 0.0898 | 10 | 994.8 | 617 | -- | -- |
| 86.65 | 0.434 | 2.28 | 4.79 | -- | -73.2 | -- | 447 | 0.0906 | -- | 994.6 | 684 | -- | -- |
| 102.5 | 0.475 | 3.08 | -0.0478 | 0.135 | -- | 0.242 | -- | 0.0818 | 10.4 | -- | -- | -- | -- |
| 102.73 | 0.475 | 3.08 | -0.0387 | 0.135 | -- | -- | -- | 0.082 | 9.99 | -- | -- | -- | -- |
| 100.83 | 0.468 | 3.08 | -0.062 | -- | 0.781 | -- | -- | 0.0899 | -- | 994.8 | 619 | -- | -- |
| 99.35 | 0.464 | 3.07 | -- | 0.163 | 0.838 | -- | -- | 0.0969 | 9.91 | 994.8 | 615 | -- | -- |
| 103.83 | 0.476 | 3.08 | -0.0404 | -- | -- | -- | -- | 0.0819 | -- | -- | -- | -- | -- |
| 102.77 | 0.474 | 3.08 | -- | 0.136 | -- | -- | -- | 0.0863 | 10 | -- | -- | -- | -- |
| 100.93 | 0.468 | 3.08 | -- | -- | 0.773 | -- | -- | 0.0975 | -- | 994.8 | 616 | -- | -- |
| 103.88 | 0.476 | 3.08 | -- | -- | -- | -- | -- | 0.0864 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 84.61 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 24 | 2 |
| 2 | 84.62 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 1 | 1 |
| 9 | 84.62 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 1 | 1 |
| 20 | 84.68 | atmosphere | 995 | 720 | < th | dose independent | rect. | 14 | 1 |
| 61 | 84.68 | atmosphere | 995 | 720 | < th | dose dependent | rect. | 14 | 1 |
| 102 | 84.69 | temperature | 25 | 30 | > th | dose dependent | rect. | 1 | 1 |
| 105 | 84.72 | temperature | 25 | 30 | > th | dose independent | rect. | 1 | 1 |
| 117 | 85.58 | atmosphere | 995 | 720 | > th | dose independent | sin | 7 | NA |
| 118 | 85.68 | atmosphere | 995 | 720 | < th | dose independent | sin | 6 | NA |
| 122 | 86.45 | atmosphere | 995 | 720 | < th | dose dependent | sin | 7 | NA |
| 226 | 89.84 | atmosphere | 995 | 720 | > th | dose independent | no | NA | NA |
| 227 | 89.93 | atmosphere | 995 | 720 | > th | dose independent | sin | 19 | NA |
| 230 | 89.97 | atmosphere | 995 | 720 | > th | dose independent | sin | 1 | NA |
| 241 | 90.45 | atmosphere | 995 | 720 | < th | dose independent | no | NA | NA |
| 473 | 90.89 | atmosphere | 995 | 720 | < th | dose dependent | no | NA | NA |
| 749 | 93.33 | atmosphere | 995 | 720 | > th | dose independent | sin | 13 | NA |
| 887 | 94.85 | humidity | 50 | 1440 | > th | dose independent | rect. | 7 | 3 |
| 888 | 94.89 | humidity | 60 | 720 | > th | dose independent | rect. | 2 | 9 |
| 894 | 95.09 | humidity | 50 | 10 | < th | dose dependent | rect. | 15 | 21 |
| 898 | 95.12 | humidity | 50 | 10 | < th | dose dependent | sin | 10 | NA |
| 901 | 95.13 | humidity | 60 | 720 | < th | dose dependent | rect. | 19 | 15 |
| 902 | 95.14 | humidity | 60 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 911 | 95.14 | humidity | 50 | 270 | < th | dose dependent | rect. | 11 | 4 |
| 947 | 95.14 | humidity | 50 | 10 | < th | dose dependent | rect. | 17 | 19 |
| 952 | 95.15 | humidity | 50 | 90 | < th | dose independent | rect. | 12 | 1 |
| 954 | 95.15 | humidity | 50 | 10 | < th | dose independent | rect. | 12 | 2 |