BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0633000 Os07g0633000|Os07g0633000
         (416 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0633000  Conserved hypothetical protein                      653   0.0  
Os03g0168300  Conserved hypothetical protein                      150   1e-36
Os10g0580600                                                       67   2e-11

>Os07g0633000 Conserved hypothetical protein
          Length = 416

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/404 (82%), Positives = 334/404 (82%)

Query: 13  STARGGHRPWTAASRGVSARRCSVAPAQVRARGPTEWWPXXXXXXXXXXXXXXXXXXXXX 72
           STARGGHRPWTAASRGVSARRCSVAPAQVRARGPTEWWP                     
Sbjct: 13  STARGGHRPWTAASRGVSARRCSVAPAQVRARGPTEWWPAAARRRRAPRRHAVAAKAGAA 72

Query: 73  XXXXXXXXXXXXXXXXXXXXMPLYEPTGVSFDEYLLDRARVFRAMFPDESRSQRLSDEEW 132
                               MPLYEPTGVSFDEYLLDRARVFRAMFPDESRSQRLSDEEW
Sbjct: 73  DARPSSSSDAVSYSSSISTDMPLYEPTGVSFDEYLLDRARVFRAMFPDESRSQRLSDEEW 132

Query: 133 RVQMLPLQFLLLTVHPVVVMQLRHRDGVLDLRIQPLNRVRAMCLFVCLFGPEGAAQTEWE 192
           RVQMLPLQFLLLTVHPVVVMQLRHRDGVLDLRIQPLNRVRAMCLFVCLFGPEGAAQTEWE
Sbjct: 133 RVQMLPLQFLLLTVHPVVVMQLRHRDGVLDLRIQPLNRVRAMCLFVCLFGPEGAAQTEWE 192

Query: 193 LRGLERDYAPASFDLGVRGSLYADXXXXXXXXXXXGHLEISIGCVLPPPMRLVPGAVMRG 252
           LRGLERDYAPASFDLGVRGSLYAD           GHLEISIGCVLPPPMRLVPGAVMRG
Sbjct: 193 LRGLERDYAPASFDLGVRGSLYADRSRGRRACRLRGHLEISIGCVLPPPMRLVPGAVMRG 252

Query: 253 VAESVLQRLAEKMKQDVDVGIVADFQRFRREKXXXXXXXTGKRTRERKIGDXXXXXXXXX 312
           VAESVLQRLAEKMKQDVDVGIVADFQRFRREK       TGKRTRERKIGD         
Sbjct: 253 VAESVLQRLAEKMKQDVDVGIVADFQRFRREKAAAAAAATGKRTRERKIGDASSSAQSAR 312

Query: 313 XXPDMTLSAASKGVSAPPGLPVPGNVGDDPLPNPGVNGPTADGAFAAGVVPPAMELPMCY 372
             PDMTLSAASKGVSAPPGLPVPGNVGDDPLPNPGVNGPTADGAFAAGVVPPAMELPMCY
Sbjct: 313 RAPDMTLSAASKGVSAPPGLPVPGNVGDDPLPNPGVNGPTADGAFAAGVVPPAMELPMCY 372

Query: 373 YVSETEQMVDRFLQTFRECCPRERGKMLTFLRRRIALNLKPRKN 416
           YVSETEQMVDRFLQTFRECCPRERGKMLTFLRRRIALNLKPRKN
Sbjct: 373 YVSETEQMVDRFLQTFRECCPRERGKMLTFLRRRIALNLKPRKN 416



>Os03g0168300 Conserved hypothetical protein
          Length = 280

 Score =  150 bits (380), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 83/192 (43%), Positives = 118/192 (61%), Gaps = 12/192 (6%)

Query: 93  MPLYEPTGVSFDEYLLDRARVFRAMFPDESRSQRLSDEEWRVQMLPLQFLLLTVHPVVVM 152
           +P+ E  G S DEYL +R R+  A+FPD+ +  +LSDEEW VQ+LP+QFL L+  PV+VM
Sbjct: 93  IPMTETPGASIDEYLQNRPRIVGAVFPDKRKRTKLSDEEWSVQLLPIQFLFLSASPVIVM 152

Query: 153 QLRHRDGVLDLRIQPLNRVRAMCLFVCLFGPEGAAQTEWELRGLERDYAPASFDLGVRGS 212
           +   + G  +    P   V+A  L +          T+++L GL+ +  P+   L VRGS
Sbjct: 153 RFVSKSGGKEY--PPHVPVKATSLLLM-------EVTDYKLDGLDSNAMPSHLALTVRGS 203

Query: 213 LYADXXXXXXXXXXXGHLEISIGCVLPPPMRLVPGAVMRGVAESVLQRLAEKMKQDVDVG 272
           LY             GH+E+S+G  LPP + LVP  V+RGV E+VL++LA +MKQD D G
Sbjct: 204 LYP---RPEGRKSLRGHVEMSVGFNLPPVLALVPEGVIRGVGETVLRQLALQMKQDFDNG 260

Query: 273 IVADFQRFRREK 284
           + ADF+R+RREK
Sbjct: 261 LAADFKRYRREK 272



>Os10g0580600 
          Length = 117

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/45 (73%), Positives = 37/45 (82%)

Query: 93  MPLYEPTGVSFDEYLLDRARVFRAMFPDESRSQRLSDEEWRVQML 137
           MPLYEP  VSFDEYLLD AR+F AMFPDESRSQR SD +W ++ L
Sbjct: 48  MPLYEPPEVSFDEYLLDCARMFHAMFPDESRSQRPSDTKWELRGL 92



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.139    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,380,363
Number of extensions: 483830
Number of successful extensions: 1310
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1308
Number of HSP's successfully gapped: 4
Length of query: 416
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 313
Effective length of database: 11,657,759
Effective search space: 3648878567
Effective search space used: 3648878567
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)