BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0631100 Os07g0631100|AK120972
         (89 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0631100  Protein of unknown function DUF701, zinc-bindi...   157   2e-39
Os02g0134300  Protein of unknown function DUF701, zinc-bindi...   135   8e-33
Os06g0156800                                                      103   3e-23

>Os07g0631100 Protein of unknown function DUF701, zinc-binding putative family
          protein
          Length = 89

 Score =  157 bits (396), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/89 (85%), Positives = 76/89 (85%)

Query: 1  MGXXXXXXXXXXXXXMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTV 60
          MG             MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTV
Sbjct: 1  MGKRKSAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTV 60

Query: 61 NALTEPIDIYSEWIDECERVNNVEDDDGA 89
          NALTEPIDIYSEWIDECERVNNVEDDDGA
Sbjct: 61 NALTEPIDIYSEWIDECERVNNVEDDDGA 89



>Os02g0134300 Protein of unknown function DUF701, zinc-binding putative family
          protein
          Length = 105

 Score =  135 bits (339), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 64/73 (87%), Positives = 68/73 (93%)

Query: 16 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTVNALTEPIDIYSEWID 75
          MDKLDTVF CPFCNHGSSVECRID+KNLIGEASCRIC E FST+VNALTEPIDIYSEWID
Sbjct: 16 MDKLDTVFCCPFCNHGSSVECRIDLKNLIGEASCRICLETFSTSVNALTEPIDIYSEWID 75

Query: 76 ECERVNNVEDDDG 88
          ECERVNN E+D+ 
Sbjct: 76 ECERVNNPEEDNA 88



>Os06g0156800 
          Length = 108

 Score =  103 bits (256), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 42/61 (68%), Positives = 53/61 (86%)

Query: 18 KLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTVNALTEPIDIYSEWIDEC 77
          KL+T FSCPFC+HG +VEC ID+K++I EASC +CQ  +STT +ALTEPID+YSEWID+C
Sbjct: 21 KLETAFSCPFCDHGGAVECSIDIKHMIAEASCFVCQARYSTTAHALTEPIDVYSEWIDQC 80

Query: 78 E 78
          E
Sbjct: 81 E 81



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.135    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,709,661
Number of extensions: 83960
Number of successful extensions: 206
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 3
Length of query: 89
Length of database: 17,035,801
Length adjustment: 59
Effective length of query: 30
Effective length of database: 13,955,175
Effective search space: 418655250
Effective search space used: 418655250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)