Os07g0631100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF701, zinc-binding putative family protein.
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Os07g0631100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF701, zinc-binding putative family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.39 | 0.196 | 15 | 0.13 | 0.433 | 0.216 | 0.261 | -0.678 | 0.00803 | 0.636 | 10.07 | 5083 | -- | -- |
| 17.8 | 0.196 | 15 | 0.156 | 0.438 | 0.262 | 0.234 | -- | -0.000701 | 0.559 | 10.12 | 27512 | -- | -- |
| 17.66 | 0.196 | 15 | 0.124 | 0.438 | 0.217 | -- | -0.65 | 0.00857 | 0.59 | 10.14 | 4688 | -- | -- |
| 18 | 0.198 | 15 | 0.0708 | 0.435 | 0.32 | -- | -- | -0.0262 | 0.559 | 10.94 | 41914 | -- | -- |
| 28.35 | 0.249 | 15 | 0.339 | -- | -0.375 | -- | -0.969 | 0.12 | -- | 10.07 | 26973 | -- | -- |
| 18.86 | 0.204 | 15 | 0.395 | 0.443 | -- | 0.25 | -- | 0.0984 | 0.602 | -- | -- | -- | -- |
| 19.13 | 0.205 | 15 | 0.385 | 0.442 | -- | -- | -- | 0.0971 | 0.582 | -- | -- | -- | -- |
| 29.15 | 0.253 | 15 | 0.473 | -- | -0.395 | -- | -- | 0.157 | -- | 2.452 | 47520 | -- | -- |
| 18.02 | 0.198 | 15 | -- | 0.44 | 0.37 | -- | -- | -0.051 | 0.517 | 8.959 | 41961 | -- | -- |
| 31.39 | 0.262 | 15 | 0.401 | -- | -- | -- | -- | 0.105 | -- | -- | -- | -- | -- |
| 23.04 | 0.225 | 15 | -- | 0.448 | -- | -- | -- | 0.0542 | 0.624 | -- | -- | -- | -- |
| 29.72 | 0.254 | 15 | -- | -- | 0.397 | -- | -- | -0.0474 | -- | 8.012 | 41302 | -- | -- |
| 35.63 | 0.279 | 15 | -- | -- | -- | -- | -- | 0.0603 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.83 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 2 | 16.89 | wind | 9 | 43200 | < th | dose independent | rect. | 24 | 3 |
| 3 | 16.91 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 4 | 16.94 | radiation | 10 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 16 | 16.95 | radiation | 40 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 20 | 16.95 | radiation | 40 | 43200 | < th | dose independent | rect. | 18 | 15 |
| 23 | 16.95 | radiation | 10 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 35 | 16.96 | radiation | 40 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 64 | 16.97 | radiation | 10 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 94 | 16.97 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 7 |
| 95 | 16.97 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 19 |
| 99 | 16.98 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 6 |
| 103 | 16.99 | radiation | 20 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 107 | 16.99 | radiation | 10 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 138 | 16.99 | wind | 7 | 43200 | > th | dose independent | rect. | 4 | 13 |
| 170 | 17.00 | radiation | 10 | 43200 | < th | dose independent | sin | 7 | NA |
| 203 | 17.00 | radiation | 10 | 43200 | < th | dose independent | rect. | 5 | 9 |
| 208 | 17.00 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 10 |
| 209 | 17.00 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 10 |
| 284 | 17.00 | radiation | 40 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 291 | 17.01 | wind | 7 | 43200 | > th | dose independent | sin | 1 | NA |
| 292 | 17.01 | wind | 7 | 43200 | < th | dose independent | sin | 1 | NA |
| 293 | 17.01 | radiation | 30 | 43200 | < th | dose independent | sin | 9 | NA |
| 296 | 17.01 | radiation | 10 | 43200 | < th | dose independent | sin | 4 | NA |
| 367 | 17.01 | atmosphere | 995 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 373 | 17.01 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 3 |
| 377 | 17.01 | radiation | 40 | 43200 | > th | dose dependent | rect. | 7 | 3 |
| 378 | 17.01 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 3 |
| 487 | 17.02 | wind | 7 | 43200 | > th | dose dependent | sin | 21 | NA |
| 490 | 17.02 | atmosphere | 1015 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 569 | 17.03 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 570 | 17.03 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 575 | 17.03 | humidity | 70 | 43200 | < th | dose independent | rect. | 7 | 5 |
| 577 | 17.03 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 637 | 17.03 | wind | 3 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 638 | 17.03 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 640 | 17.03 | humidity | 60 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 702 | 17.04 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 803 | 17.04 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 883 | 17.05 | wind | 7 | 43200 | > th | dose independent | no | NA | NA |
| 889 | 17.05 | radiation | 10 | 43200 | < th | dose independent | no | NA | NA |
| 890 | 17.05 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 891 | 17.05 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 897 | 17.05 | humidity | 70 | 43200 | > th | dose independent | rect. | 7 | 5 |